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Hi,,
First of all, thanks for the great package, it provides very interesting biological insights about my data!
I have two technical questions about plots that compare two datasets:
1. In "netAn…
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We would like to 'merge' these two processes:
GO:0019933 cAMP-mediated signaling & regulation children
GO:0010737 protein kinase A signaling & regulation children
That would capture the signali…
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GO:0031958 corticosteroid receptor signaling pathway
have been use to annotate nuclear receptors AND GPCRs. These are different pathways. Don't we need 2 terms ?
Pascale
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Issue raised by @pgarmiri in https://github.com/geneontology/go-annotation/issues/1712
> There were a few annotations of GO:0030819 ' positive regulation of cAMP biosynthetic process' to CALCRL in…
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### **Glycolysis**
- **Accuracy**: The model correctly represents glycolysis occurring in the cytoplasm, where each glucose molecule is converted into two pyruvate molecules, yielding a net gain of…
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Instead of showing "Error in netVisual_aggregate(cellchat, signaling = pathways.show, layout = "circle") : There is no significant communication of XXX", would it be possible to show an empty plot (li…
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Hello,
I have a problem with running the comparison between datasets that have different cell composition.
I prepared 3 seperate cell chat objects prior to merging. They differ by a few cell typ…
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- [ ] Will Reactome accept the strategy of assigning Molecular Functions as enablers to Reactome Reactions that get translated as Molecular Events.
- [ ] If so, can we provide a flat file as an input…
ukemi updated
11 months ago
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Hi @sqjin
Quick question on `netAnalysis_river` function.
I am trying to generate river plot for a set of pathways of interest and would like to order them based on similarity.
`netAnalysi…
jv-20 updated
3 years ago
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Hi,
After merging 3 cellchat objects, I am trying to create a bubble plot:
netVisual_bubble(cellchat, sources.use = c("cell1", "cell2"), targets.use = "cell3", comparison = c(1,2,3), angle.x = 45, …