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### Context
During eval, users looking at the SingleR and CellAssign cell type predictions were confused because their predictions differed so much. They were trying to figure out which one they …
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# Single-cell RNA-sequencing Analysis | S_beeni's blog
기초적인 10X scRNAseq data 분석 방법
[https://sbeeniny.github.io/posts/scRNA-analysis-basic/](https://sbeeniny.github.io/posts/scRNA-analysis-basic/)
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Dear Dev,
I am new user of TRUST4 on single cell TCR seq analysis, regardless, TCR seq could be successfully obtained using bulk RNAseq data.
I wonder, with my 3' 10x genomics GEX data (I have b…
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Hi All!
I'm currently working on my first project of Single Cell analysis and it will be great to have your advice.
I did all the necessary analysis of mt data with Surat - including combining 5 da…
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https://decoupler-py.readthedocs.io/en/latest/index.html
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I am analyzing data similar to 10X format(seekone DD_5) using TRUST4 , which is single-cell VDJ data with barcodes and UMI. The results of the TRUST4 analysis include both airr and barcode_airr tsv re…
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Hi,
I'm glad that scATOMIC helped me a lot in distinguishing tumor from non-tumor cells.
However, when I ran a large dataset of 67000 cells, the following error occurred: "Cholmod error 'problem too…
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I'm trying to use STARsolo to analyze novel scRNAseq data using techniques such as scFAST-seq or snRandom-seq. The principle is basically the same, using random primers to capture single cells. Its pa…
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Hello,
Thank you for developing this nice tool.
I'm interested in analyzing allele-specific expression (ASE) in my single-cell RNA-sequencing (scRNA-seq) data. This data comes from offspring tissues…
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Hi Mflamand,
I'm running the scDART-seq data using Bullseye's pipeline, and I have some confusion: How do I get the matrix of cells and sites when there is no barcode information in the final result …