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### Name of the tool
cellranger multi
### Tool homepage
https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/using/tutorial_ov
### Tool description
is a…
pcm32 updated
2 months ago
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Sub-task of #2
[several datasets in this space -- maybe choose 1-2]
- [ ] 4a. Vaccarino PsychENCODE 2018 organoids
- [ ] 4b. ...
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**Background**
The script addon.py already have functions for preprocessing, normalization, clustering, cell type prediction, gene list for cells/tissues, gene expression per cell types, DEG per tiss…
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From NeMO-Analytics created by [RLC-DCPPC](https://github.com/RLC-DCPPC) : RLC-DCPPC/NeMO-Analytics#2
Top-level issue to contain sub-tasks:
- [ ] in vivo cortex development bulk RNA-seq (#9)
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Top-level issue to contain sub-tasks:
- [ ] in vivo cortex development bulk RNA-seq (#8)
- [ ] in vivo cortex development single-cell RNA-seq (#9)
- [ ] stem cell models of human cortex developm…
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Published: https://doi.org/10.1093/nar/gkx681
Preprint: https://doi.org/10.1101/129759
> While only recently developed, the ability to profile expression data in single cells (scRNA-Seq) has alr…
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Why do we need to execute 'convert mouse gene identifiers to human ones that match data in GWAS summary data'? I don't quite understand. Are GWAS sources different from single-cell data sources?
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Hi team,
Thank you very much for developing this amazing tool! Do you think Velocyto is suitable for analyzing single nucleus RNA-seq dataset as well? The reason why I ask this is because single nucl…
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Hi anders,
Very powerful and effective tools for single cell methylation data analysis, but I wonder if you have consider the batch efforts across different library, and how to remove batch effort …
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### If you are filing this issue based on a specific GitHub Discussion, please link to the relevant Discussion.
This PR is following the discussion from the [PR#776](https://github.com/AlexsLemonade/…