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### Description of feature
Hello,
We've found that `nf-core download` doesn't know how to use `$NXF_SINGULARITY_LIBRARYDIR`(it only knows `$NXF_SINGULARITY_CACHEDIR`). Although the following shoul…
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Just a few things that would be useful to have in the notebook:
- [ ] Mapping of singularity containers
- [ ] DummyRunner
- [ ] How to make use of the printed mermaid graph (not directly-styx rel…
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There is a new container by @stebo85, use this command to test on Neurodesk (either a local installation or https://play.neurodesk.org/):
```
bash /neurocommand/local/fetch_and_run.sh micapipe v0.2.3 …
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### Description of the bug
Pipeline fails when using aligner `star_rsem` because of missing `bowtie` in container `singularity-mulled-v2-cf0123ef83b3c38c13e3b0696a3f285d3f20f15b-64aad4a4e144878400649…
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Hi, I am interested in your pipeline, particularly the use of the training dataset for VariantRecalibration, but I can't see the Singularity container. Did I miss the obvious, or can you make a link a…
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We should add some docs to help folks create jupyter kernels that run inside singularity containers. I ran into this need recently when trying to use pytorch geometric installed in a regular Anaconda…
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**Describe the bug**
When I want to launch interface like brainvisa, on my Ubuntu 24.04 computer, I have an import error with the message :
```
ImportError: /lib/x86_64-linux-gnu/libc.so.6: versio…
Hboni updated
8 hours ago
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Hi,
I noticed that poreCov crashes when running pangolin via singularity and a reasonably modern nextflow version. It seems that recent updates in the path mounting defaults of nextflow broke the de…
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### What happened?
origin:
- https://github.com/ReproNim/containers/issues/118
Since 23.1.1 (ok in 23.1.0) converted to singularity image is not usable due to .py files being not given read perm…
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** Rstudio Server in Singularity **
*** A wiki entrance explaining how to download and setup a Singularity container for R dev. (Rstudio server / Shiny server / other R stuff) in the cluster. ***
I…