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Hi, I am using a Linux HPC system to use msconvert to convert .WIFF files to .mzML. We can only use Singularity on HPC, and do not have root access. I am using the docker container provided by pwiz an…
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### What happened?
origin:
- https://github.com/ReproNim/containers/issues/118
Since 23.1.1 (ok in 23.1.0) converted to singularity image is not usable due to .py files being not given read perm…
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Greetings @brianjohnhaas,
I am trying to run trinity on my institute HPC using singularity with the command in bold below. Subsequently, I was experiencing the error of: Error, cmd: mkdir... A more…
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We should try to create a singularity container, containing everything ready to go. This would make it much easier to try out the code. A challenge is on how to create container such a way that it wou…
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Hi, I recently start use monorail pipeline again, but fail to make a unify output. even though pump pipeline seems like to be successfully finished.
I pulled the most recent version of monorail-pum…
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So far the simple workflow implemented with Singularity containers and a Bash script is only tested on ParallelWorks platform. This needs to be tested on other HPC platforms as well. This Issue tracks…
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### Description of the bug
Hi, I have added path for multiple vcfs inside samplesheet.csv as input to the pipeline and kept `chr` column empty as recommended ("If the target genomic data file conta…
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### Version of Apptainer
What version of Apptainer (or Singularity) are you using? Run
```
$ singularity --version
singularity version 3.8.3
```
### Expected behavior
I am launching sin…
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Hi MolProbity team!
I am interested in running some of the command line tools you provide and in particular "oneline-analysis" in an HPC cluster. To do so I need a docker image that I can convert to…
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It seems like it might be possible to have creation of singularity images from the same Dockerfile we use to build our docker images.
I wonder if we could even have automated builds at Singularity…