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How can I pass options for fmriprep through halfpipe? I received some data that is already brain-extracted and didn't realize so the outputs are wacky. I wanted to add the command "--skull-strip-t1w s…
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This error occurs when I convert any model, the error log is
`cooperative_groups_helpers.h(87): error: identifier "cudaCGSynchronizeGrid" is undefined`
`1 error detected in the compilation of "…
HHZ94 updated
3 years ago
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Current documentation (especially workflow description) is ok when it comes to answering fairly technical and specific questions ("What was used to perform skull stripping?"). However, to make FMRIPRE…
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### What would you like to see added in fMRIPrep?
Dear fMRIPrep-Team,
we are currently working with longitudinal data and would like to use the strucutral freesurfer-output for further analysis. U…
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Thank you for the great work and for sharing the code. We would like to apply the model on our dataset and am curious to know how dependent current model is on the data acquisition and preprocessing s…
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When this happens, the resulting YAML is invalid:
```yaml
# Set the threshold value for refining the resulting CSF segmentation tissue mask.
# The default value is 0.95.
# CSF (cerebrospinal flu…
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Hi - I use FMRIPREP regularly and its great software. Thanks for your work on this.
I have some data acquired with an ultra-fast fMRI sequence involving the acquisition of only 2 (oblique) slices.…
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Would you please specify the dataset link? I opened the ADNI link that you have given and in the "Data and Sample" section there is MRI image but it has no T1-weighted images.
ghost updated
3 years ago
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- [ ] spectroscopic decomposition
- [ ] N3 normalization
- [x] histogram normalization
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### Description
We want to update SPM12 and CAT12 to a more recent version; it probably makes sense to update both at the same time given their interdependence, and carefully test several scenarios…