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**Snakemake version**
`8.16.0+0.g838b2fce.dirty` (from latest stable docker container)
Same error on `8.13.0`
**Describe the bug**
`snakemake --list-changes code` fails with `TypeError: …
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Hello everyone,
I've tried using the config.16s.yaml with the test data it works fine. However, when I try running a dry run using my own data it prompts me this error.
You will not be able to…
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Useful for testing if RO-Crates generated by third-party tools are valid - e.g. a Workflow Run Crate generated by Galaxy or snakemake.
Likely to take the form of a command-line tool
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**Snakemake version**
8.4.7
**Describe the bug**
Snakemake stops with a `FileNotFoundError` when attempting to inject a global Conda environment defined in a remote module.
I used `snakedepl…
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When running contamination modeling, we get the following error:
> Traceback (most recent call last):
> File "/vera/ptmp/gc/rahvi/NISPureParallel/./workflow/scripts/contamination.py", line 198, in…
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Hi!!!, hope you are doing great!. The program it's giving me this error, do you know what could be the reason??
Im attaching a screenshot. Feel free, please, to ask me whatever you want.
![image](…
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### Context
Originally proposed in https://github.com/nextstrain/cli/issues/373#issuecomment-2174603786
It'd be helpful to have a summary of workflow stats in the form of a [Snakemake report](ht…
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When using snakemake with cryptography >=43.0.0 one gets 2 deprecation warnings:
```
$ snakemake
Using workflow specific profile profiles/default for setting default command line arguments.
/opt…
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**Software Versions**
Snakemake 8.16.0
snakemake-executor-plugin-slurm 0.9.0
slurm 23.11.7
**Describe the bug**
I have recently moved to Snakemake v8.16 and have been trying to execute…
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## Checklist
- [x] I am using the current [`main`](https://github.com/pypsa-meets-earth/pypsa-earth/tree/main) branch or the latest [release](https://github.com/pypsa-meets-earth/pypsa-earth/releas…