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Each DE method is potentially optional for users who don't use them.
Consider using the same approach as https://github.com/ArtifactDB/alabaster.matrix/blob/3d04935f3e76d6a7159ee47b8f79f7f1c21c6cde…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/LieberInstitute/DeconvoBuddies
Confirm the follow…
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I noticed some strange behavior in `vis_grid_clus()` when trying to plot logical variables such as `in_tissue`, the same variables plot as expected in `vis_clus()`. Converting the lgl to factor does n…
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## The multi-gene function fails if the genes requested report no expression variation in some slides (samples).
I have encountered an exception when certain genes are not present in some slides.…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/LieberInstitute/visiumStitched
Confirm the follow…
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Please briefly describe your problem and what output you expect. If you have a question, please don't use this form. Instead, ask on using the appropriate tag(s) including one for this package.
##…
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https://github.com/LieberInstitute/Human_DLPFC_Deconvolution/tree/main
Add datasets to package:
- [x] Bulk RNA-seq
- [x] RNAScope proportions
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Thanks for the nice package!
I've been using `vis_grid_clus` to plot multiple samples together. I noticed the legends representing levels of `clustervar` are always turning to numbers instead of sh…
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2) can you propagate more metadata to the index -- particularly size of download.
_Originally posted by @vjcitn in https://github.com/Bioconductor/Contributions/issues/3064#issuecomment-1565308647_…