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Following an example on the tutorial page, I came up with the code below.
```julia
## Dependencies
using Mamba
## Data
obs = Dict{Symbol, Any}(
:m1 => 10,
:m2 => 7,
:m3 => 3…
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### What happened?
- When I added a 'RotationRugplot' under 'RotationManager' (and I am not quite familiar with this type of plot), I get the following error message immediately and the plot is bla…
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Hi all,
I just tried to create some simple stochastic model and reproduce the results in COPASI (see below).
It seems like the roadrunner gillespie integrator is not calculating the particle number i…
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## Reason
In some cases the ability to change/control parameter must be limited. For example, some simulations compute properties that must remain constant with time, but for performing stochasti…
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Hello, I’m a student majoring in biology in Japan.
I usually use Python so I'm very new to Julia...
I am trying to fit my experimental data(~400,000 angles, -pi ~ +pi bimodal) with mixture of von…
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**Question❓**
Please bear with me I am not an experienced programmer and I might be doing something silly.
I am trying to integrate
p = 200.0
function psi(du,u,p,t)
du[1] = -im * p * u[1]
…
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On lines 232-234 of the new version, you say:
>...almost all important characteristics are determined by the very
>small (typically 3 - 5), and thus highly stochastic, number of beneficial mutatio…
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To evaluate the behavior of the two agent types—**IndividualAgent** (competitive, individualistic behavior) and **SystemAgent** (collaborative, cooperative behavior)—design a series of experiments tha…
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In Blackbear we need to be able to specify parameters in the MOSOE input file (this is required for using the stochastic methods module to launch many simulations). We currently use a hack, where a `{…
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Hi,
I was running a simulation with the `SSACSolver`, and noticed that sometimes it gets stuck while reading from stdin in this line:
https://github.com/StochSS/GillesPy2/blob/de40702372aefade7634…