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As you can see from the log below - seems like GOTTCHA is throwing warnings about Use of uninitialized value $readcount ... etc etc etc.
This is just an FYI. I'm sure this is an easy fix, but it tak…
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Dear authors,
I am attempting to run quast on some metagenomic assemblies. It seems that quast is able to download some of the references, however it terminates after a certain point, even if I repea…
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Hello,
Hope someone still keeps an eye on issues here :-)
I am trying to install ReMatCh in an Ubuntu 20.02 in order to run the INNuca pipeline, but I cannot get through the installation.
See…
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Hi,
I'm running make p_compressed, but I think it may be stuck? I modified the make file to use 12 threads instead of one (which was taking forever), but it's been stuck here for nearly two hours.…
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After World War II, antibiotics were considered "wonder drugs", since they were easy cures for what had been intractable ailments. To learn which drug worked most effectively for which bacterial infec…
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Apparently the max size of an edge object is 4194304 characters, due to a buffer limit imposed somewhere in neo4j-admin. @BluePiggy49 has implemented a workaround in code, but we will eventually want …
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After World War II, antibiotics were considered "wonder drugs", since they were easy cures for what had been intractable ailments. To learn which drug worked most effectively for which bacterial infec…
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Failure on AMRfinder run, error is printed below
```shell
Feb-27 14:56:01.558 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for
task: name=PHOENIX:PHOENI…
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The _Listeria monocytogenes_ database on bacpop.org is missing the required graph file. I have only tested this for the reference database, as the full sample set was taking too long to download. The …
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The upper respiratory tract microbiota of healthy adults is affected by Streptococcus pneumoniae carriage, smoking habits, and contact with children – A. Cristina Paulo et al. – Microbiome 2023
DOI: …