DaehwanKimLab centrifuge issues

DaehwanKimLab / centrifuge

Classifier for metagenomic sequences

GNU General Public License v3.0

235 stars 73 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

centrifuge-inspect python script is incompatible with python >=3.12

#281 papanikos opened 3 hours ago
0
Viral new File format?

#280 mwylerCH opened 1 week ago
2
Centrifuge Classifying Reads, but the Report is Empty

#279 echolley31 closed 2 weeks ago
3
Couldn't find parent of taxID 138 - directly assigned to root.

#278 davidmadariaga closed 2 weeks ago
6
how do i setup the SILVA database?

#277 davidmadariaga closed 2 weeks ago
4
centrifuge-kreport values do not ad

#276 pablorr24 opened 1 month ago
1
nt index incomplete build

#275 igordot opened 3 months ago
21
option --packed

#274 mwylerCH opened 3 months ago
0
NCBI nt index

#273 igordot opened 3 months ago
6
Can using "--mm" flag reduce memory usage?

#272 nzx9581 opened 4 months ago
2
Database question

#271 SergeyBaikal closed 3 months ago
10
Database problem

#270 ADelacuv opened 4 months ago
1
ERROR): Expected centrifuge to be in same directory with centrifuge-class:

#269 CDX-bioinformatics closed 4 months ago
2
Unrecognised `--temp-directory` option, however specified in code?

#268 jfy133 closed 5 months ago
9
M. tuberculosis genome size error

#267 DOH-KEW4303 opened 5 months ago
0
not able to build database, taxonomy does not exist warnings, latest version by git

#266 koppk opened 5 months ago
1
Database download taking a lot of disk space + taking too long

#265 pablorr24 closed 5 months ago
3
The second file of customer db is empty

#264 LilyAnderssonLee closed 6 months ago
4
centrifuge download fails

#263 ggonnella opened 8 months ago
2
Error downloading centrifuge databases

#262 RayanaFeltrin opened 10 months ago
11
Update README.md

#261 stevenhwu closed 11 months ago
1
Error when downloading only bacteria version

#260 dafin678 opened 11 months ago
3
how to make seqid2taxid.map

#259 doeun99 opened 1 year ago
1
Error when executing centrifuge "Argument list too long"

#258 BenjaminJPerry opened 1 year ago
4
Custom database including only specific organisms for reads separation?

#257 AMK06-1993 opened 1 year ago
0
error in make

#256 kkkkksw closed 1 year ago
0
Where are you Sulfobacillus?

#255 DntBScrdDv opened 1 year ago
33
make p_compressed = "could not find jellyfish"

#254 DntBScrdDv closed 1 year ago
1
Calculate abundance without genome size taken into account

#253 pjtorres opened 1 year ago
0
Unusual abundance results with custom classifier index

#252 hirosatosd opened 1 year ago
6
Unable to use sudo make install prefix=/usr/local

#251 JBriel1 opened 1 year ago
4
Error compiling on macOS ventura

#250 vicho33 opened 1 year ago
1
Warning: Encountered reference sequence with only gaps

#249 wittler-github opened 1 year ago
2
Issues with --nodc, --justref and --noref parameters

#248 darko-cucin opened 1 year ago
0
Classification filtering only virus/archaea sequences

#247 NINADCROCHA opened 1 year ago
1
number of cpus detection :: possible oversubcribe problems

#246 EricDeveaud opened 1 year ago
2
Centrifuge Database Download Error

#245 DanMan-09 opened 1 year ago
6
(ERR): centrifuge-class exited with value 1

#244 ramnageena11 opened 1 year ago
4
Print (un)classified sequences

#243 namnh7 closed 1 year ago
1
Database download for Centrifuge

#242 ramnageena11 opened 1 year ago
223
viral bacteria and archaea DB now very large >60G

#241 PaulAONeill opened 1 year ago
3
centrifuge k-report not conforming to pavian

#240 lewhiteside opened 2 years ago
4
Error in centrifuge-download

#239 csaucar opened 2 years ago
2
centrifuge-inspect throws SyntaxError error

#238 phlatphish closed 2 years ago
2
Issue with centrifuge-download (dustmaster: command not found)

#237 lewhiteside closed 2 years ago
3
centrifuge-build fails for unknown reason - Again

#236 jsonProgram closed 2 years ago
2
Does not compile using g++ 10

#235 dchandran-sgmo closed 2 years ago
2
Does not compile using g++ 10

#234 dchandran-sgmo opened 2 years ago
1
Use of the "make" command

#233 tbazilegith opened 2 years ago
1
How to build a custom index (compression)?

#232 linjiahao962889027 opened 2 years ago
2