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DaehwanKimLab
/
centrifuge
Classifier for metagenomic sequences
GNU General Public License v3.0
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Issue with Centrifuge database download
#231
meghahs
opened
2 years ago
7
Centrifuge failed with a strange error message
#230
Ptero64
opened
2 years ago
3
Installation issue Compatibility to others
#229
ramnageena11
closed
1 year ago
1
The report generation step takes too much time
#228
ryuzheng
closed
2 years ago
2
Possibility to preapare a new nt database
#227
Jolvii85
opened
2 years ago
3
Is it possible to compile on M1 Macbooks?
#226
eparisis
opened
2 years ago
4
ssh error in download
#225
xiaoyunguo
closed
2 years ago
0
NT Databe failure (ERR): centrifuge-class died with signal 9 (KILL)
#224
JochenSchaefergmxde
opened
2 years ago
6
How a result.tsv file transform to a report.tsv file.
#223
shaopopper
opened
2 years ago
0
Update the script to handle viral genome downloading
#222
mourisl
closed
2 years ago
1
can't donwload viral library
#221
ALFLAG
closed
2 years ago
3
Out of memory allocating the offs[] array for the Bowtie index.
#220
jessicarowell
opened
2 years ago
4
Update conda version from 1.0.4_beta to 1.0.4
#219
rmzelle
opened
2 years ago
0
No taxid when query assigned to a specific seqID (entry is in the taxonomy)
#218
Piplopp
closed
2 years ago
6
make issue
#217
klahmers1
closed
2 years ago
7
centrifuge_report.tsv empty, but classification results exist
#216
jessicarowell
opened
2 years ago
1
Bus error (core dumped) while building database
#215
vscmarques
closed
2 years ago
5
centrifuge-build works, but can't reads into memory
#214
jameslz
closed
2 years ago
9
make p_compressed+h+v fails to download genomes from NCBI
#213
cae803
opened
2 years ago
3
centrifuge-build: syntax error near unexpected token
#212
MjelleLab
closed
2 years ago
0
make p+h+v Error downloading
#211
MjelleLab
opened
3 years ago
0
Support for the new taxid files (accession2taxid) for building nt dabase?
#210
cae803
closed
2 years ago
5
"make" error over cloned repository
#209
Valentin-Bio-zz
opened
3 years ago
1
add Plant Genome to Index
#208
hmamine
opened
3 years ago
0
cutoff of score in result file
#207
fancyge
opened
3 years ago
4
Issue with number of raw reads
#206
mggrami
closed
3 years ago
2
How to download taxonomy for bacterial genome only
#205
bioinfonext
opened
3 years ago
1
Error when downloading centrifuge virus genome
#204
Honchkrow
closed
2 years ago
0
Error in centrifuge
#203
akhalil2
closed
3 years ago
6
kraken-style report
#202
chulghim
closed
3 years ago
1
centrifuge-download error extra operand '.gz'
#201
oatesa
opened
3 years ago
21
How does Centrifuge classify reads at subspecies/strain level given NCBI taxonomy?
#200
punnettsun
opened
3 years ago
1
centrifuge-build hanging up
#199
GastonViarengo
opened
3 years ago
19
Classified/Unclassified
#198
punnettsun
closed
3 years ago
1
no nt map file in this link
#197
FengqingWang0712
opened
3 years ago
7
Is there a way to skip report generation?
#196
shuiquantang
opened
3 years ago
0
Sequences seem to be erroneously classified as Taxonomy ID 1 (root) when -k 1 option is used.
#195
ryotag
opened
3 years ago
0
Please create a python 3 compatible conda recipe
#194
bkille
closed
3 years ago
0
Add dependencies to README and MANUAL
#193
alanorth
opened
4 years ago
2
issue with a specific taxon (ID: 853)
#192
Aiswarya-prasad
closed
3 years ago
4
Centrifuge 1.0.4-beta fails to compile with GCC 9.3.0
#191
boegel
closed
3 years ago
1
extract matched sequences
#190
ganiatgithub
opened
4 years ago
1
How to set the digit number in abundance column
#189
tenlives
opened
4 years ago
0
Multiple species rank codes for intermediate clades
#188
krcurtis
opened
4 years ago
0
Centrifuge incorrect scoring?
#187
kweitemier
opened
4 years ago
3
Oops. Need to delete this issue!
#186
richardmleggett
closed
4 years ago
1
centrifuge on CGC: custom database and index format
#185
BioRB
opened
4 years ago
2
Please try again on a computer with more memory.
#184
GrantHov
closed
4 years ago
2
Still working on an ARM compatible version?
#183
jdeligt
opened
4 years ago
1
--sample-sheet example
#182
themouldinator
closed
4 years ago
2
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