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DaehwanKimLab
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centrifuge
Classifier for metagenomic sequences
GNU General Public License v3.0
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Centrifuge index not much smaller than input database FASTA
#181
mmp3
closed
4 years ago
2
Question: is the project mature yet?
#180
ghost
closed
4 years ago
0
centrifuge-inspect error "Assertion `false' failed"
#179
joshua-theisen
opened
4 years ago
5
centrifuge-build fails for unknown reason
#178
theo-allnutt-bioinformatics
closed
4 years ago
2
centrifuge-downlaod fails for vertebrates
#177
theo-allnutt-bioinformatics
opened
4 years ago
9
converting seqId to readable names
#176
rchikhi
opened
4 years ago
2
centrifuge-download - g option duplicated
#175
theo-allnutt-bioinformatics
closed
4 years ago
2
unable to prevent least common ancestor classification
#174
mmp3
closed
5 years ago
1
Question about DB building
#173
fetyj
closed
5 years ago
2
Custom DB build taxonomy fail
#172
theo-allnutt-bioinformatics
opened
5 years ago
1
Centrifuge with 16S database
#171
LaraUrban
closed
5 years ago
13
Reference position for centrifuge hits?
#170
jackwadden
closed
5 years ago
2
Species and its subspecies/strain both appear in the centrifuge report
#169
zifanzhu
closed
5 years ago
2
Approximating memory use by bucket size and difference-cover period
#168
piyuranjan
opened
5 years ago
0
sam file format
#167
maxibor
closed
5 years ago
2
centrifuge build
#166
deepak646
opened
5 years ago
0
concat downloaded sequences
#165
oatesa
opened
5 years ago
2
Assembly illumina & nanopore data warnings
#164
BurinkiWU
opened
5 years ago
1
Bucket size calculation
#163
themouldinator
opened
5 years ago
0
Missing Index
#162
LaraUrban
opened
5 years ago
8
centrifuge-inspect warnings
#161
BurinkiWU
opened
5 years ago
6
classification fails on non-redundant ncbi nt database
#160
sepidehalamouti
opened
5 years ago
2
16S rRNA database
#159
mbhall88
closed
5 years ago
17
Why is my abundace estimation value zero for all classifications? How can this be turned on?
#158
harisankar991
opened
5 years ago
32
Low assigned reads
#157
juulluu21
opened
5 years ago
1
Is there a hook to dump the classification output to RAM and not dump it into disk?
#156
harisankar991
closed
5 years ago
1
Can we load the RAM with index files before centrifuge classification starts?
#155
harisankar991
closed
5 years ago
1
--sample-sheet file
#154
juulluu21
closed
5 years ago
2
Merged pair reads question
#153
LeonardosMageiros
closed
5 years ago
2
Meaning of abundance in classification summary
#152
lec49
opened
5 years ago
5
Extract specific kmer
#151
novitch
closed
5 years ago
8
Behavior of --exclude-taxids
#150
kweitemier
closed
5 years ago
3
Reads excluded due to too may hits?
#149
kweitemier
closed
5 years ago
7
Classification with the nt database memory issues
#148
Piplopp
closed
5 years ago
4
centrifuge-build seems to ignore --kmer-count flag
#147
dshivak
opened
5 years ago
0
centrifuge-build hangs silently on FASTA file with small sequences
#146
dshivak
closed
5 years ago
1
Can Centrifuge be use for 16S classification of Oxford Nanopore reads?
#145
laksyn
opened
5 years ago
1
Could not locate a Centrifuge index corresponding to basename "..." Error: Encountered internal Centrifuge exception (#1)
#144
nadiaandreani1
opened
5 years ago
8
Abundances on different taxonomic levels conflict
#143
GrantHov
opened
5 years ago
0
Error in downloading the pre-built Index & Refseq
#142
ypsung
closed
5 years ago
1
Need python2.7 for centrifuge-kreport
#141
pjtorres
opened
5 years ago
0
Feature request: output of genomic location in the classification
#140
omixer
closed
5 years ago
2
Centrifuge v1.0.4-beta Expected centrifuge to be in same directory with centrifuge-class
#139
Sarah-Nadeau
closed
5 years ago
0
how to install without "sudo" perimission
#138
ypsung
closed
5 years ago
2
Makefile patch to allow build/install control
#137
outpaddling
opened
5 years ago
0
centrifuge-build: Error: Encountered exception: 'No more suffixes'
#136
Greblica
opened
6 years ago
1
Sharing one index between several processes, over time.
#135
Adoni5
closed
5 years ago
2
Centrifuge-build out of memory for small index? (fasta ~40 GB)
#134
Greblica
opened
6 years ago
3
Could the output format be as the kraken?
#133
yeli7068
opened
6 years ago
2
Does the provided NT index have low complexity?
#132
wpearman1996
opened
6 years ago
1
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