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DaehwanKimLab
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centrifuge
Classifier for metagenomic sequences
GNU General Public License v3.0
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Does the provided NT index have low complexity?
#132
wpearman1996
opened
6 years ago
1
centrifuge-kreport doesn't exist when installing with miniconda
#131
FaezeK
opened
6 years ago
3
Problem with centrifuge-download for too many taxIDs
#130
danicic7
closed
6 years ago
5
What is the memory usage for building custom database?
#129
Confurious
opened
6 years ago
6
Use of uninitialized value in numeric comparison in kreport
#128
papanikos
opened
6 years ago
1
bioconda recipe integration test fails
#127
Krischan
closed
6 years ago
2
using --policy parameter
#126
MeHelmy
closed
6 years ago
3
changing the default threshold of five labels per sequence
#125
mghanbari
closed
6 years ago
2
centrifuge-class died with signal 11 (SEGV)
#124
ps-account
opened
6 years ago
3
centrifuge-class died with signal 11 (SEGV) (core dumped)
#123
MRuinels
opened
6 years ago
10
Index building got stuck with more than 20 million RefSeq sequences
#122
sooms1
closed
6 years ago
5
Make centrifuge index from ENA (European Nucleotide Archive) data?
#121
leiendeckerlu
opened
6 years ago
0
[Feature request] Add seq to "tab" outfmt
#120
yeli7068
closed
6 years ago
1
Stuck on opening index
#119
peradastra
closed
6 years ago
5
multiple index files
#118
shlomobl
closed
6 years ago
2
taxonomy id doesn't exist!
#117
shlomobl
opened
6 years ago
12
Argument list too long...
#116
shlomobl
closed
6 years ago
4
compilation error on Ubuntu Trusty (14.04)
#115
Krischan
closed
6 years ago
2
Invalid Index
#114
FloydWi
opened
6 years ago
4
centrifuge Build issue
#113
narsapuramvijaykumar
opened
6 years ago
2
Incomplete genomes
#112
shlomobl
closed
6 years ago
3
Separate read-classification from report generation
#111
maubarsom
opened
6 years ago
6
include WGS database
#110
MRuinels
opened
6 years ago
3
centrifuge-kreport: process "no rank" assignments
#109
jsh58
closed
6 years ago
1
unique_ptr and fpermissive compilation errors
#108
yesimon
opened
6 years ago
1
Make a new release?
#107
tseemann
closed
6 years ago
2
gcc on macos compilation error: "is not usable in a constant expression"
#106
tseemann
closed
6 years ago
1
min-totallen default value 50 not 0
#105
MeHelmy
closed
6 years ago
1
Control bowtie-build
#104
MeHelmy
closed
6 years ago
2
filtering by score
#103
MeHelmy
closed
6 years ago
3
Empty input-sequences.fna file
#102
lec49
opened
6 years ago
10
Performance loss when using custom index path
#101
bistace
opened
6 years ago
4
NT Database - Centrifuge-build warnings
#100
isardi
closed
6 years ago
2
Questions about NT index generation
#99
bistace
closed
6 years ago
6
Centrifuge multiple matches of the same read to the same Tax ID
#98
asulit08
opened
6 years ago
8
Centrifuge misassigns some reads
#97
jsh58
closed
6 years ago
18
Discrepancies in centrifuge output
#96
asulit08
closed
6 years ago
20
Support for handling multiple samples
#95
maplesond
opened
6 years ago
17
Missing Alignments
#94
evolarium
closed
6 years ago
1
centrifuge-build doesn't find tax id in the map file
#93
vrmarcelino
closed
6 years ago
2
Failure of centrifuge-kreport
#92
apredeus
closed
6 years ago
5
From centrifuge output to tsv
#91
Anuravi123
closed
6 years ago
3
--al-gz is producing a sam with no line endings that samtools can not view
#90
scottdaniel
closed
6 years ago
12
Reducing false positive detection
#89
fconstancias
opened
6 years ago
3
(ERR): centrifuge-class died with signal 11 (SEGV)
#88
Cheyou
closed
6 years ago
1
--out-fmt option
#87
wyim-pgl
closed
6 years ago
1
One result/report file per submitted input-file?
#86
sschmeier
closed
6 years ago
1
Fixing some numbers in centrifuge-kreport
#85
gerners
closed
6 years ago
1
Version of the pre-compiled NCBI nt index
#84
amphioxus
closed
6 years ago
2
empty report when --met_file is on
#83
vesnapajic
opened
7 years ago
2
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