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Hi, I think the one-residue-code of GLH is wrong in `mdtraj.core.residue_names._AMINO_ACID_CODES`:
https://github.com/mdtraj/mdtraj/blob/36b4cee61d936d9ecee875fbdde37120b59a4d51/mdtraj/core/residue_n…
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to be added to aitom.average.align.simple_iterative.average
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[Gemmi](https://github.com/project-gemmi/gemmi) is an open sourced c++ library with python bindings for working with structural biology data.
I have implemented code to convert a pdb to a cif with…
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The bibliography command creates a section named "References". You have another section command "\section*{\referencestitle}%" which results in a duplication. Uncommenting this line works perfectly.
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Hi,
I came from the CATH-alphaflow google colab and was trying run the whole workflow. I have a problem that when I try to wget the UniDoc url in my terminal, it says that the issued certificate wa…
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Our lab is developing the [PyGSP](https://github.com/epfl-lts2/pygsp), a python package for graph signal processing. It may be relevant to your graph computing list. Our approach is different from the…
mdeff updated
6 years ago
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Designconstant initiatives, programs and projects.
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About https://carpentries-incubator.github.io/fair-bio-practice/01-wellcome/index.html
From my experience people often confuse FAIR data and science with open data and science. It would be good to …
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I was trying to do subtomogram averaging, and the command is
e2spt_refine.py sets/template_bin4.lst --reference=sptsgd_03/threed_05.hdf --niter=5 --sym=c1 --mass=3000.0 --goldstandard=30 --pkeep=0.8…
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