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hi,
When I read your article, I saw that HISV achieved high recall and precision in detecting inter translations of K562 and T47D.
I also noticed that your standard set comes from the article "Int…
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Hi,
Trying to use nanopore reads as input using the latest version of breseq (thank you very much for developing this feature), however, I get the following error:
terminate called after throwin…
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Hi,
When I get the clustalw.out.checked.filtered.structure file, how can I do statistics for it? For example, the number of gene with large structural variations.
Thanks a lot!
Regards,
…
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Hello, I was exploring this script https://github.com/RCollins13/WGD/blob/master/bin/scoreDosageBiases.R as I would like to annotate my WGS data with dosage bias scores.
I couldn't find the cov.fi…
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The vision: create a series of functions to leverage the elements of VRS to ask whether or not two variants are equivalent, given some definition of equivalence. While there are many potential defini…
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### Discussed in https://github.com/ga4gh/vrs/discussions/461
Originally posted by @ahwagner in https://github.com/ga4gh/vrs/discussions/461#discussioncomment-8833511
A draft model of 4 propos…
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Hi,
I am struggling to run the step4 of the pipeline, I have the flanking.read produced but not the fullreads:
/home/cecile/Desktop/Postdoc_cecile/2_Zymo/4-Mutation_accumulation_analysis_TE_dyna…
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After detecting structural variations (SVs) using the default parameters of CuteSV, I found that the bases of “REF” in some INS (insertion) events in the vcf do not match those in the reference genom…
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These are often used interchangeable or are confused, so I think in EDAM we're splitting hairs to be including both [DNA mutation](http://edamontology.org/topic_2533) and [DNA polymorphism](http://eda…
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Hi,
In the paper [Novel sequences, structural variations and gene presence variations of Asian cultivated rice](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5931083/#__sec9title) authors run novoBr…