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Hello!
Hopefully this is a quick one: although xGESV is broken out in `Solve` right now, there's a very similar pair of functions in the issue name, documented e.g. [on he very top of this page](ht…
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**The issue**
I have been attempting to get into the Biopython contributor community and learn to develop, but am running into issues while installing Biopython. Namely, I cannot get the tests to r…
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Dear phylophlan team,
I've installed PhyloPhlAn 3 from conda, and run the following command:
> phylophlan -i /home/mwa/input_phylophlan -t a -d phylophlan -f supermatrix_aa.cfg --diversity medi…
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Out of a toy interest, I am trying to run OpenCL and the tree likelihood computation library [BEAGLE](https://github.com/beagle-dev/beagle-lib/issues/157) to run on a PI. BEAGLE assumes that [work siz…
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The following code snippet fails with `AttributeError: ImmutableMatrix has no attribute as_coeff_Mul.`:
``` python
from sympy import *
from sympy.abc import *
A = Matrix([d, e, f])
C = Matrix([g, h,…
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Hi,
Quite impressed with the speed at which mmseq performs pairwise alignments. Have a couple of questions:
1. Can i perform alignments using sequences with degenerate characters? Right now the…
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RNAmmer is able to annotate rRNA genes containing gaps of Ns. Is this a feature that you would want to implement in Barrnap? See below for an example:
``` fasta
>rRNA_205522_53445-53560_DIR- /molecul…
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Hi,
I'm trying to install from source following the directions [here]( https://celerite2.readthedocs.io/en/latest/user/install/). The reason I'm installing from source rather than the pre-compiled…
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Hi Liam,
I am using make.simmap and I have run into a problem with zero transition rates in the Q matrix for the SYM/ARD models, similar to that described on your blog [Bug fix for make.simmap with…