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liamrevell
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phytools
GNU General Public License v3.0
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missing value color argument?
#155
HedvigS
opened
2 months ago
0
mcmMk should set likelihood to "fitMk" when data input is matrix
#154
rdiaz02
closed
2 weeks ago
1
cophylo not plotting the second tree
#153
bshahid5
opened
2 months ago
0
Bug: phytools::plotTree.boxplot -- argument "x" is missing, with no default
#152
stiatragul
closed
2 weeks ago
1
Feature request: branch coloring in phylo.to.map
#151
alexweisberg
opened
3 months ago
0
cophylo with polytomies error
#150
cmt2
opened
4 months ago
0
Error in apply(X, 1, sum/rstate) : dim(X) must have a positive length
#149
alrichardbollans
opened
5 months ago
0
subscript out of bounds
#148
ZestingJin
opened
5 months ago
0
Cannot change scale font size or control horizontal position in barplot
#147
theo-allnutt-bioinformatics
closed
7 months ago
11
install error
#146
wang0430
closed
7 months ago
1
"Error in tree$maps[[jj[i]]] : invalid subscript type 'list'"
#145
ilcneto
closed
7 months ago
1
phylo.heatmap remove elements and smush
#144
HedvigS
closed
7 months ago
1
add.species.to.genus could not match your species to a genus
#143
alrichardbollans
closed
11 months ago
1
Dumb question: Why are the PCA scores different from the positions of the points in a plot of the PCA?
#142
aleungplants
closed
7 months ago
1
recent maps for phylo.to.map
#141
ChloBeaul
opened
11 months ago
1
Problem when setting priors on stem edges with make.simmap
#140
Lwoots
closed
7 months ago
1
Error in optimizing with phylosig lambda
#139
lilyb3
closed
7 months ago
2
Error in plot.window(xlim, ylim, log = log, ...) : need finite 'xlim' values
#138
Zoey-Aminah
closed
7 months ago
2
Custom linking line colors in cophylogeny using association file?
#137
myco-bradshaw
closed
1 year ago
1
outline color argument to dotTree
#136
HedvigS
closed
1 year ago
8
as.princomp on phy.pca using mode="cor"
#135
aleungplants
closed
1 year ago
1
nodelabels mixes up existing node labels
#134
theo-allnutt-bioinformatics
closed
1 year ago
2
Tip numbers / labels
#133
theo-allnutt-bioinformatics
closed
11 months ago
2
Error in matexpo(Q * EL[i]) : NA/NaN/Inf in foreign function call (arg 1)
#132
xuechunxu
closed
1 year ago
5
Betacoronaviruses tree has wrong case
#131
hlapp
closed
1 year ago
1
`paintBranches` error when sapply within function returns ii as list
#130
rubysaltbush
opened
1 year ago
1
fixed bug in option mean.edge about length of edge.length
#129
fpavone
opened
1 year ago
0
Disagreement between phylosig(, method="lambda") and plot.phylosig() - possible bug?
#128
cameron-weadick
closed
11 months ago
3
wrong scale bar size in plot.cophylo
#127
dvs
closed
1 year ago
2
Create github page
#126
brunomioto
closed
1 year ago
2
ratebytree not converging - what should I do?
#125
soungalo
closed
1 year ago
4
Add rooted argument to consensus.edges.R
#124
AEgit
closed
1 year ago
2
consensus.edges() produces only (!) unrooted trees (with solution)
#123
AEgit
closed
1 year ago
2
R4.2.2 for windows and Rstudio crash every time I library phytools
#122
syuu2021
closed
1 year ago
5
Error when using "ContMap"
#121
loaizarachnid4
closed
1 year ago
1
Error when using "as.multiPhylo"
#120
OttoHenning
closed
1 year ago
1
plotTree/plotSimmap converting underscores to spaces without option to keep underscores
#119
AlesBucek
closed
1 year ago
1
read.newick() occasionally crushes R
#118
kfuku52
closed
1 year ago
4
dotTree with missing data
#117
HedvigS
opened
1 year ago
1
Using make.simmap with previously inferred transition rates
#116
Belinda333
closed
1 year ago
7
Bug: brownie.lite doesn't rearrange standard errors
#115
blasiusz
closed
1 year ago
1
make.simmap
#114
navilo
opened
2 years ago
2
Strange discrepancy in duration of processing for make.simmap
#113
flashton2003
closed
1 year ago
2
Clarification on the ace output of simmap summary
#112
flashton2003
closed
2 years ago
2
source of phylogram() in phylo.heatmap
#111
ThomWorm
closed
2 years ago
1
collapse.to.star not working as before
#110
dominicev
closed
2 years ago
2
phylANOVA
#109
Edison2021
closed
2 years ago
0
Ancestral state reconstructions are incorrect when pis are not equal
#108
arklumpus
closed
2 years ago
3
midpoint.root stealing/moving edge labels
#107
joshrest
closed
11 months ago
1
specify that getDescendants takes one node
#106
HedvigS
closed
1 year ago
0
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