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liamrevell
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phytools
GNU General Public License v3.0
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getDescendants not fetching all descendants?
#105
HedvigS
closed
1 year ago
7
How can I get coords from a ltt95 plot?
#104
pelow22
opened
2 years ago
0
Error in installing package
#103
losblancos3
closed
2 years ago
1
phyl.pairedttest Error in solve.default(V, d - dbar) : system is exactly singular: U[5,5] = 0
#102
evolucionario
opened
2 years ago
0
ContMap throws error for some trees
#101
voidikova
closed
2 years ago
1
How to do an analyses for two categorical variables in Phytools?
#100
emxly86
closed
2 years ago
1
Feature Request: FitzJohn et al. (2009) root prior in make.simmap
#99
mpnelsen
closed
2 years ago
2
What happens if make.simmap() gets an unrooted tree?
#98
HedvigS
closed
2 years ago
3
Unable to load library(phytools)
#97
layhiang1995
closed
2 years ago
2
getting uncertainty/distributions of ancestral states from simmap
#96
HedvigS
closed
2 years ago
1
"subscript out of bounds" in ancestral state estimation using phytools
#95
avvypaks
closed
2 years ago
1
SCM extracting values at internal nodes (or an approximation of it)
#94
HedvigS
closed
2 years ago
5
Changing type to cladogram within cophylo
#93
JonathonMifsud
closed
2 years ago
1
Error in describe.simmap
#92
takaW496
closed
2 years ago
2
nodeHeights produces non identical but identical node heights
#91
jacobmaugoust
closed
3 years ago
1
Formatting phylo.to.map plot - subregion of map and point shape
#90
EveTC
closed
3 years ago
1
Error in solve.default(C) : Lapack routine dgesv: system is exactly singular: U[393,393]=0
#89
vanessayang0927
opened
3 years ago
2
allow adding a tip whose origin is older than the root
#88
josephwb
opened
3 years ago
2
Feature request: cophylo of more than 2 trees
#87
alexweisberg
opened
3 years ago
0
phylo.heatmap error
#86
SolayMane
opened
3 years ago
0
phyl.pca outputs all imaginary coordinates
#85
amsesk
closed
3 years ago
7
Error in if (k <= 0.8 && any(rr > (strwidth("W") * fsize/2))) rr <- rr/max(rr) *
#84
jmtorresruiz
opened
3 years ago
0
Phylo.to.map Error in res[edge[i, 2]] <- res[edge[i, 1]] + el[i] : replacement has length zero
#83
Kelzor
opened
3 years ago
2
plotTree.boxplot()cuts off top and bottom of boxplot
#82
schmitt8
closed
2 years ago
1
Error in seq.int(from, to, length.out = n) : 'to' must be a finite number
#81
ReemH91
closed
3 years ago
1
pbtree behaviour: taxa-stop criterion not working as expected
#80
josephwb
closed
3 years ago
4
object 'last_plot.phylo' not found & Error in seq.default(0, length = n)
#79
Cactusolo
opened
3 years ago
3
data format for phytools
#78
rthapa1
closed
2 years ago
1
Error in `[<-`(`*tmp*`, x == seq[i], i, value = 1) : subscript out of bounds
#77
ymilesz
closed
3 years ago
3
adjust position of scale bar in cophylo
#76
alexweisberg
opened
3 years ago
0
Issue/bug with rotateNodes and colouring of tip bars
#75
Thijmen18
opened
3 years ago
0
Installing phytools (version 0.7-47) on Mac OS 10.15.6 under R version 4.0.2
#74
eliamson
closed
3 years ago
2
plotSimmap does not respect show.tip.label = FALSE
#73
SimonGreenhill
closed
12 months ago
1
plotTree.wBars and type="fan" now thows a 'rep' error
#72
maxfarrell
closed
3 years ago
1
Can't add optional arguments to sim.multiCtt/sim.ctt
#71
stfriedman
closed
4 years ago
1
Bug: consensus tree
#70
abraao-crypto
opened
4 years ago
0
Map state/providence divitions
#69
AgustinPardo
opened
4 years ago
0
Tree branches colors
#68
AgustinPardo
closed
3 years ago
14
Line up tree node labeles
#67
AgustinPardo
closed
4 years ago
2
Imperfectly drawn tree-map (unrooted problem?)
#66
AgustinPardo
opened
4 years ago
0
Tree data sets
#65
AgustinPardo
closed
4 years ago
1
How to custom change colours on the map?
#64
tahamimo
closed
3 years ago
5
Problems installing in R version 3.3.2 (CentOS 7)
#63
agroppi
closed
4 years ago
2
Meanings of the edge numbers?
#62
xie186
closed
4 years ago
2
improve bind.tree doc
#61
josephwb
closed
4 years ago
0
Font size for the colour bar in plotBranchbyTrait
#60
ChrisHIV
closed
4 years ago
1
adding more than one species to my tree
#59
iadamo1
opened
4 years ago
0
Phylogenetic diversity estimate
#58
ucassee
closed
4 years ago
0
feature request-gradient information in biplot.phyl.pca
#57
Jigyasa3
opened
4 years ago
0
Varying border color for plotTree.wBars
#56
willgearty
opened
4 years ago
0
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