liamrevell phytools issues

liamrevell / phytools

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issues

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adding more than one species to my tree

#59 iadamo1 opened 4 years ago
0
Phylogenetic diversity estimate

#58 ucassee closed 4 years ago
0
feature request-gradient information in biplot.phyl.pca

#57 Jigyasa3 opened 4 years ago
0
Varying border color for plotTree.wBars

#56 willgearty opened 4 years ago
0
Custom expansion constant and x/y adjustments for cladelabels

#55 willgearty opened 4 years ago
0
adding timescale to a multiple stacked tree plot

#54 Jigyasa3 opened 5 years ago
0
cophyloplot for unequal number of tip labels between two trees

#53 Jigyasa3 closed 4 years ago
3
Problem with write.simmap / read.simmap

#52 baptelie closed 5 years ago
2
The software simmap cannot be downloaded

#51 Maotingru closed 5 years ago
1
Add cex argument to plot.backbonePhylo()

#50 joelnitta closed 4 years ago
1
Enable font size adjustment in plot.backbonePhylo

#49 joelnitta closed 4 years ago
1
object 'Brazil.tree' not found?

#48 ghost closed 5 years ago
1
scoping problem in fastAnc, phytools_reroot; breaks when latest treeio is loaded

#47 pbradz closed 5 years ago
1
anc.ML with missing data

#46 santelmovasconcelos closed 4 years ago
5
make.simmap throws warning on large dataset

#45 astridboehne opened 5 years ago
1
Possible bug in contMap() function

#44 PabloSanMar closed 5 years ago
1
branch with polytomies

#43 Jigyasa3 closed 4 years ago
8
Error in xy.coords(x, y) : 'x' and 'y' lengths differ

#42 Espresso4TheMind closed 3 years ago
4
objective: 0 when running phylo.to map

#41 XHuang043 closed 4 years ago
3
reroot() does not pass edgelabels = TRUE to root()

#40 miltontan closed 4 years ago
1
is there any example for how to use phytools?

#39 BEAST-Community closed 5 years ago
2
tip label offset in fan projection

#38 rvosa closed 4 years ago
1
ambigous

#37 astridboehne closed 5 years ago
0
Warning message: In log(comp[1:M + N]) : NaNs produced using rerootingMethod

#36 astridboehne closed 4 years ago
1
apeACE function

#35 astridboehne closed 5 years ago
1
problem with extract.clade.simmap

#34 baptelie closed 4 years ago
1
Plot phylo.heatmap and paintBranches() tree in one plot?

#33 HeatherKates opened 5 years ago
1
Cannot simulate stochastic character mappings for constant site-patterns

#32 milliescient opened 5 years ago
0
read.newick freezes when reading newick text with one tip only

#31 LunaSare closed 1 year ago
1
plotbar not using arguments (while wBars do)

#30 drelo closed 5 years ago
0
reroot fails if node is set to the first internal node in edge matrix

#29 thackl closed 4 years ago
1
name of trees labeled on cophylo plot

#28 thkuo opened 6 years ago
0
Small bug in make.simmap

#27 Ax3man closed 6 years ago
2
Align clade labels in phylogeny

#26 lauracespedesarias closed 4 years ago
4
make.simmap appears to run slow

#25 halabikeren opened 6 years ago
1
Save a phylomorphospace3d to file Rstudio

#24 calugo closed 4 years ago
2
rotate.multi in tipRotate() limited to ~12 tips per multifurcated node

#23 RaSieb closed 6 years ago
2
Run make.simmap in parallel

#22 flashton2003 closed 6 years ago
5
adding improvements one by one

#21 KlausVigo closed 6 years ago
1
improve ancThresh, include C++ version of threshState

#20 KlausVigo closed 6 years ago
1
add grid to phylo.heatmap

#19 KlausVigo closed 6 years ago
1
improve nodeHeights (much faster)

#18 KlausVigo closed 7 years ago
0
fixing bug when simulating stochastic mappings for invariable data

#17 milliescient closed 1 month ago
0
cophylo object doesn't plot all branches

#16 chirila closed 7 years ago
2
Problems installing in R version 3.4.1 (2017-06-30)

#15 oeco28 closed 7 years ago
6
wrong node label in drop.tip.singleton

#14 MarioJose closed 4 years ago
3
An error when executing treeSlice()

#13 MichealZeng opened 7 years ago
3
error in make.simmap when using pi argument

#12 santiagombv closed 7 years ago
3
read.simmap and write.simmap are not working properly

#11 J-Moravec closed 7 years ago
2
make.simmap(): Check shape of Q matrix. And others.

#10 J-Moravec closed 7 years ago
1

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