-
Hello.
Thank you for developing this amazing resource. I am having some problems with normalizing RNAseq data from TCGA. In brief, I am doing a "sanity check" using breast cancer data subdivided into…
-
I am getting the following error in `preprocessFunnorm`:
> Error in preprocessCore::normalize.quantiles.use.target(matrix(crtColumn.reduced), : Supplied target argument should be a numeric vector…
-
https://github.com/mtandon09/mafwiz @Miachol 觉得还行的话可以放到hiplot
-
When using TCGAbiolinks, an error message "Error in GDCquery(project = project, data.category = "Clinical", file.type = "xml") : unused argument (file.type = "xml")" occurs. I don't know how to handle…
-
I have performed GO enrichment and obtained the barplot, I was wondering if it is possible to obtain the list of the genes present in each Go term
Thanks in advance
-
When I try to retrieve Gene Expression Data through this code:
query$rnaseq
-
From the publication worldwide shows that BRAF V600E is most common point mutation, but recently I worked on the TCGA dataset, all V600E were converted to V640E which is so different from the data in …
-
To my surprise I have problems using GDCprepare. The odd thing is, it used to work properly in the past, on the same machine with the same system and the same dataset:
`> data sessionInfo()
R ver…
-
The following error occurs while trying to download and prepare "Gene expression" data for "TCGA-LIHC". I have many possible old versions like "TCGAbiolinks_2.10.5" that works for my PI and others as…
-
not only the genomic segments