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This looks like a typo in the config
toolshed.g2.bx.psu.edu/repos/iuc/anndata_import/anndata_import/0.10.3+galaxy0
native_specification --nodes=1 --ntasks=1 **--mem=277** --time=36:00:00 --parti…
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The first column is a number of times the given tool triggered implicit conversion (decompression) of a compressed fastq dataset in last ~6 months on Main.
If we could ensure the tools can work wit…
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```
What steps will reproduce the problem?
1. Cocoboot2 Revision 13
2. make -b
3. makewav is unable to open the S record file dw2dsk.img
What is the expected output? compile to complete
What do you …
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The current AST types uses `CopyCell` from toolshed, which is not really sound. Adding to that, interior mutability is inherently confusing.
I propose that we move back to normal heap allocated objec…
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http://toolshed.g2.bx.psu.edu/repos/iuc/quast/quast/5.2.0+galaxy1 -- errors
`OSError: [Errno 30] Read-only file system: '/usr/local/lib/python3.9/site-packages/quast_libs/silva'`
But http://toolsh…
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is it just tools?
is it just a workflow?
or is it both?
are there any docs?
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Testing all Krona
- [x] https://usegalaxy.org/root?tool_id=toolshed.g2.bx.psu.edu/repos/crs4/taxonomy_krona_chart/taxonomy_krona_chart/2.7.1
- [x] https://usegalaxy.org/root?tool_id=toolshed.g2.bx…
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I was attempting to run an internal/local tool shed using the guide here: https://galaxyproject.org/toolshed/hosting-a-local-toolshed/
The tool shed configuration has migrated to yaml, but the docs…
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tool_id=toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MarkDuplicates/3.1.1.0
The UseGalaxy.fr server is able to process the example job sent into bugs at ORG.
Job API ID bbd44e69cb8906b5586…
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Mostly exact duplication:
- https://galaxyproject.org/installing-repositories-to-galaxy/ (sources at `src/installing-repositories-to-galaxy/`)
- https://galaxyproject.org/toolshed/installing-reposit…