-
### Ask away!
Dear community,
I am quite new to this, I have performed a transcriptome analysis using epi2me labs app,
My question is, what should i do after ? I have several files and I don't k…
-
Is it possible to use the tool for evaluating correction of the cDNA reads obtained for transcriptome sequencing? Would it be enough to substitute reference genome with the reference transcriptome?
-
Dear @harta55
I am very excited to try the EnTAP pipeline with some transcriptome data.
I am using singularity to run the pipeline. I have installed it successfully and then conducted the initi…
-
I noticed that if I use the option `--outSAMtype BAM SortedByCoordinate` with `--quantMode TranscriptomeSAM`, the genomic bam is sorted but the transcriptome bam is not. I'm just wondering if there's …
-
I am attempting to work through your processing examples using my own data sets, and I do not recognize your transcriptome length file type in the run construct_batch pre-processing step (gg_200524_mo…
-
I really get to understand more what we were doing with all our command lines when I was able to see the GOslim terms and visualize them for example in a graph.
-
Hello vg team
It is amazing the work you are doing.
I am relatively new to using vg and I would appreciate a little help with my question please.
I want to download an already constructed human pa…
-
In semi-model organisms, NCBI and Ensembl usually provide annotations based on ab initio gene prediction and orthology based evidence. With cheap RNAseq, we can build RNA based gene models using Cuffl…
-
Hi. Thank you for your nice tool!
I have a poorly annotated transcriptome file in my species Aiptasia. This file lacks isoform level annotation and all the isoforms are removed. I am wondering is…
-
https://doi.org/10.1038/s41586-024-07769-3
Please keep this checklist for curation of a new study.
- [ ] [create an issue on datahub](https://github.com/cBioPortal/datahub/issues/new) before cur…