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Hello,
Thank you very much for providing this exciting tool!
I am interseted in the "In silico spatial transcriptomics", which predict the gene expression from the sole H&E stain images.
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Determine which ontologies to use for transcriptomics data (meta data templates)
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Thanks for this package!
I was wondering which variable you would recommend using as offset in the context of spatial transcriptomics. Every "cell" in this case includes on average 4-5 cells and I am…
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great work, but I some doubt about the problem of celltype-transfering, for example, I can use Tangram to deconvolute the spatial transcriptomics data and get the celltype-label of each spot. In ano…
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Can I use this package to load an anndata object which contains spatial transcriptomics data from the 10x Visium platform?
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Thank you for the great method!
Regarding this algorithm, I'd like to ask whether it is suitable for spatial transcriptomic dataset, such as 10x Genomics Spatial Transcriptomics. If applicable, do …
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E.g., a search for: [Integrating microbial and host transcriptomics to characterize asthma-associated microbial communities](https://bugsigdb.org/w/index.php?title=+Special%3ASearch&search=Integrating…
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Hi,
I am new to this topic, so please do not mind any noob question.
I downloaded .rds file (https://ftp.cngb.org/pub/CNSA/data4/CNP0002432/CRC_Stereo.rds) and read it using readRDS.
Next, I…
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Hi,
I have some visium data sets on which I would like to try CellChat. Is it possible for CellChat to do this?
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**Question**
In chapter [Integrating AIR and transcriptomics](https://www.sc-best-practices.org/air_repertoire/multimodal_integration.html), the recommended integration is using function `scirpy.pp.m…