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### Please link to the GitHub Discussion for this proposed analysis.
https://github.com/AlexsLemonade/OpenScPCA-analysis/discussions/635#discussioncomment-10140478
### Describe the goals of this ana…
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I am trying to demultiplex tumor samples using genotype data from healthy cells, and demuxlet is calling the majority of my tumor cells doublets. I'm looking for any insight about whether somatic muta…
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Hi,
Thank you for this great tool! I'm relatively new to the field of bioinformatics and have a question that is probably quite easy to answer but could not find any solution to my problem on the …
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Hello, I'm currently using BayesPrism for deconvolution and I have a question.
I'm working with single-cell sequencing data, which includes an equal amount of tumor cells and normal (non-tumor) cel…
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Hi, again.
I was able to solve issues with running BayesPrism thanks to your help.
Now I have been using both CIBERSORTx and BayesPrism to analyze various TCGA data with single-cell matrix of my…
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Hi there,
I am trying to build a reference based on tumor cells from this small cell lung cancer dataset, https://cellxgene.cziscience.com/collections/62e8f058-9c37-48bc-9200-e767f318a8ec.
They ca…
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STEP 15: Clustering samples (not defining tumor subclusters)
INFO [2022-10-26 23:06:39] define_signif_tumor_subclusters(p_val=0.1
INFO [2022-10-26 23:06:39] define_signif_tumor_subclusters(), tum…
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Hy,
can we output the final theta for the cell state?
If not, is it better to use first theta for the cell state or run the Bayesprism again with cell state as cell type?
Best ragards.
Roy
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It looks like the method was evaluated only on samples with high tumour purity.
> All epithelial cells in the metastasized tumor P6198 are malignant cells. The three primary tumors (P5847, P5931, and…
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Sorting by `projectDescription` fails to properly sort all results.
```
$ http 'https://service.azul.data.humancellatlas.org/index/projects?size=30&catalog=dcp37&order=asc&sort=projectDescription&…