statgen demuxlet issues

statgen / demuxlet

Genetic multiplexing of barcoded single cell RNA-seq

Apache License 2.0

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issues

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Segmentation fault (core dumped) using 8 vcf samples

#113 syjoh96 opened 1 month ago
0
Only AMB as BEST output

#112 DavideBrex opened 1 month ago
0
discrepancies in demuxlet if done with / without the pileup

#111 Marwansha closed 4 months ago
1
Fix overflow issue with long read single cell data

#110 youyupei opened 4 months ago
0
Too many doublet

#109 kxxxjo closed 4 months ago
4
Run demuxlet on data from PacBio

#108 lbl233 closed 1 year ago
0
Segmentation fault after initializing SAM reader

#107 littmanr16 opened 1 year ago
2
Required depth for WGS

#106 daccachejoe opened 1 year ago
0
The demuxlet is running too slowly.

#105 baibing0211 opened 1 year ago
1
How to use microarray SNP data as reference genotypes in demuxlet?

#104 josemovi opened 1 year ago
0
how to calculate raw reads count number for each genotype for a droplet.

#103 mihuzx opened 1 year ago
0
SAM/BAM/CRAM file has 1 before 10, but VCF/BCF file has 1 after 10

#102 WernaUVenema opened 1 year ago
7
install demuxlet

#101 Jylab-Genetics opened 1 year ago
1
arrays for snp detection

#100 guillemsanchezsanchez1996 opened 1 year ago
0
demuxlet output first row is not contain the barcode information

#99 cacaonib opened 2 years ago
1
Segmentation fault

#98 wingkyBs closed 2 years ago
6
Using single-nuclear samples

#97 learning-MD opened 2 years ago
0
Different Genotype arrays for demultiplexing samples

#96 carolynmcgrail opened 2 years ago
1
Getting number of SNPs and SNP IDs used to assign each cell

#95 erosix opened 2 years ago
1
Is there any example using demuxlet with scRNA-seq platforms other than 10x?

#94 kohjy2000 opened 2 years ago
1
Crash due to std::bad_alloc

#93 SingulomicsBioinformatics opened 2 years ago
0
WARNING: Cannot find AF field from INFO field in VCF file, now calculate AF from AC/AN. Segmentation fault

#92 changostraw opened 2 years ago
2
VCF file read bug

#91 BanafshehKhaki opened 2 years ago
2
The total number of pass-filtered reads is too less

#90 Moxsf opened 2 years ago
11
installation issues

#89 lo2811 opened 2 years ago
0
How to get VCF file from 10x Genomics 3' gene expression multiplexed library?

#88 kushalsuryamohan closed 3 years ago
1
Missing cell barcodes

#87 jchang97 closed 3 years ago
2
Understand demuxlet output

#86 Zepeng-Mu closed 3 years ago
0
[bugfix] variant sites may be skipped

#85 nh13 closed 3 years ago
3
Explictly warn/fail when an indel is encountered

#84 nh13 opened 3 years ago
3
Identify sex (contig ploidy) of samples

#83 nh13 opened 3 years ago
0
Demuxlet Output Questions

#82 nh13 opened 3 years ago
2
how to make GL/GP from SNP array data

#81 hongsilv closed 3 years ago
2
Update README.md

#80 Gvaihir closed 3 years ago
0
installation problems

#79 jjenny opened 3 years ago
8
installation issue

#78 cjhong opened 3 years ago
2
demultiplex mixture of genotyped and non-genotyped samples

#77 notimenocall opened 3 years ago
0
Test Run on Seqwell Datasets

#76 angelussong opened 4 years ago
2
How to get 10x scATAC-seq VCF file

#75 Ping-lin14 opened 4 years ago
0
Get reliable singlets without a proper depth seq of one donor

#74 vianCastelan opened 4 years ago
0
terminate called after throwing an instance of 'std::bad_array_new_length'

#73 vkartha opened 4 years ago
9
demuxlet when genotype data is not available for one of the samples in the pool

#72 ALogandha opened 4 years ago
0
demuxlet when genotype data is not available for one of the samples in the pool

#71 ashmilrp closed 4 years ago
0
Understanding the naming of Doublets and Ambiguous barcodes

#70 prashanthsama1 opened 4 years ago
0
not generating .best and .sing2 output files

#69 slyahn opened 4 years ago
5
Doublets overestimation

#68 castaway1990 opened 4 years ago
2
Install issue on Mac 10.14.6

#67 arvindsoni80 closed 4 years ago
1
Installation failure

#66 howardBDC123 opened 4 years ago
1
Different Chromosomal Notation in VCF and BAM Files

#65 katimbach opened 4 years ago
4
'assert' was not declared in this scope

#64 rlittman16 opened 4 years ago
4