statgen demuxlet issues

statgen / demuxlet

Genetic multiplexing of barcoded single cell RNA-seq

Apache License 2.0

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issues

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Install dependency problem with htslib

#61 ppaxisa opened 4 years ago
2
Core dumped after/during bcf_filtered_reader

#60 cramirezs opened 4 years ago
0
Fix memory issues

#59 VincentGardeux opened 4 years ago
3
Samples (almost) missing from results

#58 ocqub opened 4 years ago
9
master

#57 Gvaihir closed 4 years ago
0
snATAC-Seq

#56 hirokomatsui opened 4 years ago
12
Add option to produce only singlets probabilities (fix #52)

#55 arogozhnikov closed 4 years ago
3
Does demuxlet support Red Hat linux?

#54 yh154 opened 4 years ago
0
Installing demuxlet

#53 vkartha opened 4 years ago
1
Disable doublet analysis

#52 schultzmattd opened 4 years ago
7
Downstream analysis

#51 bassanio opened 4 years ago
1
Doublets with the same sample ID

#50 nbartonicek opened 4 years ago
2
Recommendation for cleaning of a VCF file for demuxlet

#49 nbartonicek opened 4 years ago
2
VCF file throws "Not a VCF/BCF file" error

#48 kmuench closed 5 years ago
3
install error

#47 yupingz opened 5 years ago
7
How can I prepare the VCF file?

#46 ShuqingL opened 5 years ago
0
Demuxlet without UMIs

#45 PernilleYR opened 5 years ago
1
Cannot find Droplet/Cell tag CB/UB warning messages

#44 asenabouth closed 5 years ago
2
Segmentation fault - core dumped

#43 jatinarora-upmc closed 5 years ago
8
Excessive read filtering

#42 plantformatics closed 5 years ago
2
version of demuxlet that does not require external genotypes

#41 bio-la opened 5 years ago
4
installing Demuxlet

#40 siyao-liu opened 5 years ago
14
Segmentation fault

#39 ONeillMB1 closed 5 years ago
1
Any recommandation about computational requirement?

#38 HichamAffia closed 5 years ago
0
terminate called after throwing an instance of 'std::bad_alloc' what(): std::bad_alloc Aborted

#37 AhmedArslan opened 5 years ago
11
FATAL ERROR - [E:int32_t main(int32_t, char**)] Your VCF/BCF files and SAM/BAM/CRAM files have different ordering of chromosomes. SAM/BAM/CRAM file has 1 before 10, but VCF/BCF file has 1 after 10 terminate called after throwing an instance of 'pException' what(): Exception was thrown Aborted (core dumped)

#36 AhmedArslan opened 5 years ago
11
using demuxlet for two mouse strain ( BL6 and BALBC)

#35 yxian9 opened 5 years ago
4
vcf file for figure 2

#34 jon-xu opened 5 years ago
0
problem installing demuxlet on a server

#33 amayer21 opened 5 years ago
10
multithreading?

#32 jerowe opened 5 years ago
0
Remove -fopenMP dependency in Makefile.am

#31 THYao closed 5 years ago
0
five or eight samples, https://www.ebi.ac.uk/ena/data/view/PRJNA381100

#30 worker000000 opened 5 years ago
1
--alpha 0.3 for 3 samples pooled data?

#29 x811zou opened 6 years ago
4
Fail to open .single

#28 x811zou opened 6 years ago
0
Demuxlet on Single Nuclei

#27 achamess opened 6 years ago
4
vcf file with all individual information for a pooled sample

#26 x811zou closed 6 years ago
8
Naive question about VCF file

#25 NicolasHipp opened 6 years ago
8
FATAL ERROR - [bcf_filtered_reader.cpp:5 void BCFFilteredReader::init_params()] bcf_file_name is empty

#24 caot closed 6 years ago
2
Different results for the tutorial

#23 davetang closed 6 years ago
1
Demuxlet filtering out vast majority of reads that 10X deems good

#22 LuckyMD opened 6 years ago
6
Ambiguity in tutorial of demuxlet

#21 J-sara closed 6 years ago
2
Likelihoods not caclulated (10x Chromium)

#20 harmbrugge closed 5 years ago
7
How to enable --pileup mode/feature?

#19 papanikos opened 6 years ago
3
Request for raw counts of figure 3D

#18 tom-schneider opened 6 years ago
0
Could demuxlet be run on linux without Docker?

#17 keremw closed 6 years ago
1
running with no argument causes segmentation fault

#16 wac closed 6 years ago
0
gpAB has a size limit (causes seg faults for large # snps and genotypes)

#15 wac closed 6 years ago
5
Output SNP information for the barcodes

#14 papanikos closed 6 years ago
1
--alpha does not set up gridalpha[] properly

#13 wac closed 6 years ago
1
GL vs PL for genotype likelihood

#12 acwarren opened 6 years ago
1

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