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statgen
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demuxlet
Genetic multiplexing of barcoded single cell RNA-seq
Apache License 2.0
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discrepancies in demuxlet if done with / without the pileup
#111
Marwansha
closed
1 month ago
1
Fix overflow issue with long read single cell data
#110
youyupei
opened
2 months ago
0
Too many doublet
#109
kxxxjo
closed
1 month ago
4
Run demuxlet on data from PacBio
#108
lbl233
closed
9 months ago
0
Segmentation fault after initializing SAM reader
#107
littmanr16
opened
1 year ago
2
Required depth for WGS
#106
daccachejoe
opened
1 year ago
0
The demuxlet is running too slowly.
#105
baibing0211
opened
1 year ago
1
How to use microarray SNP data as reference genotypes in demuxlet?
#104
josemovi
opened
1 year ago
0
how to calculate raw reads count number for each genotype for a droplet.
#103
mihuzx
opened
1 year ago
0
SAM/BAM/CRAM file has 1 before 10, but VCF/BCF file has 1 after 10
#102
WernaUVenema
opened
1 year ago
6
install demuxlet
#101
Gh-Genetics
opened
1 year ago
1
arrays for snp detection
#100
guillemsanchezsanchez1996
opened
1 year ago
0
demuxlet output first row is not contain the barcode information
#99
cacaonib
opened
1 year ago
1
Segmentation fault
#98
wingkyBs
closed
1 year ago
6
Using single-nuclear samples
#97
learning-MD
opened
1 year ago
0
Different Genotype arrays for demultiplexing samples
#96
carolynmcgrail
opened
1 year ago
1
Getting number of SNPs and SNP IDs used to assign each cell
#95
erosix
opened
2 years ago
1
Is there any example using demuxlet with scRNA-seq platforms other than 10x?
#94
kohjy2000
opened
2 years ago
1
Crash due to std::bad_alloc
#93
SingulomicsBioinformatics
opened
2 years ago
0
WARNING: Cannot find AF field from INFO field in VCF file, now calculate AF from AC/AN. Segmentation fault
#92
changostraw
opened
2 years ago
2
VCF file read bug
#91
BanafshehKhaki
opened
2 years ago
2
The total number of pass-filtered reads is too less
#90
Moxsf
opened
2 years ago
11
installation issues
#89
lo2811
opened
2 years ago
0
How to get VCF file from 10x Genomics 3' gene expression multiplexed library?
#88
kushalsuryamohan
closed
2 years ago
1
Missing cell barcodes
#87
jchang97
closed
2 years ago
2
Understand demuxlet output
#86
Zepeng-Mu
closed
3 years ago
0
[bugfix] variant sites may be skipped
#85
nh13
closed
3 years ago
3
Explictly warn/fail when an indel is encountered
#84
nh13
opened
3 years ago
3
Identify sex (contig ploidy) of samples
#83
nh13
opened
3 years ago
0
Demuxlet Output Questions
#82
nh13
opened
3 years ago
2
how to make GL/GP from SNP array data
#81
hongsilv
closed
3 years ago
2
Update README.md
#80
Gvaihir
closed
3 years ago
0
installation problems
#79
jjenny
opened
3 years ago
8
installation issue
#78
cjhong
opened
3 years ago
2
demultiplex mixture of genotyped and non-genotyped samples
#77
notimenocall
opened
3 years ago
0
Test Run on Seqwell Datasets
#76
angelussong
opened
3 years ago
2
How to get 10x scATAC-seq VCF file
#75
Ping-lin14
opened
3 years ago
0
Get reliable singlets without a proper depth seq of one donor
#74
vianCastelan
opened
3 years ago
0
terminate called after throwing an instance of 'std::bad_array_new_length'
#73
vkartha
opened
3 years ago
9
demuxlet when genotype data is not available for one of the samples in the pool
#72
ALogandha
opened
3 years ago
0
demuxlet when genotype data is not available for one of the samples in the pool
#71
ashmilrp
closed
3 years ago
0
Understanding the naming of Doublets and Ambiguous barcodes
#70
prashanthsama1
opened
4 years ago
0
not generating .best and .sing2 output files
#69
slyahn
opened
4 years ago
5
Doublets overestimation
#68
castaway1990
opened
4 years ago
2
Install issue on Mac 10.14.6
#67
arvindsoni80
closed
4 years ago
1
Installation failure
#66
howardBDC123
opened
4 years ago
1
Different Chromosomal Notation in VCF and BAM Files
#65
katimbach
opened
4 years ago
4
'assert' was not declared in this scope
#64
rlittman16
opened
4 years ago
4
demuxlet usage
#63
ytang0831
opened
4 years ago
0
exome genotypes from healthy cells to demultiplex tumor samples
#62
slyahn
opened
4 years ago
1
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