-
The files are all existing and in correct folder structure after I moved them. Now when I run `cwl-runner --validate` I get this error below and `org.w3id.cwl.cwl.File` is no where in this yml file.
…
-
The links (and wget commands) for the full GWAS results (UKBB GWAS Imputed v3 - File Manifest Release 20180731) are not working. Has the location changed?
-
There is a summary statistic from the EAS population(No validation data, No bim, No genotype data), so how can I get the final snplist with corrected beta in the best prs module?
Because No Genotype…
-
Hello,
I have been exploring your NeuralCVD repository for our study and appreciate the considerable effort put into this tool. We believe it has a potential to make a significant contribution to o…
-
Hi,
I am not familiar with google cloud and hope to run the anlaysis locally. Is there a way for me to download the files from Google Cloud? For example, I want to get sumstats files but I don't kn…
yjqiu updated
5 years ago
-
There doesn't seem to be a way to revoke invitations that have been sent out to join a project. This might be problematic since the invitations don't seem to expire or the expiration time is very long…
-
when i used ldsc for genetic correlation estimation,i got error like this :
KeyError: 'Incompatible alleles in .sumstats files: ATAT. Did you forget to use --merge-alleles with munge_sumstats.py?'
…
-
hi there,
I am a ALLOFUS user, was trying to run this pipeline in the workbench. i created my own config file, like this,
%%writefile allofus_test.config
workDir = "gs://fc-secure-203a5a33-…
-
First of all thank you for such a useful tool.
I have a problem. Could you help me solve it? like #178
Here is my running code:
`python polyfun.py \
--compute-h2-L2 \
--compute-ldscores …
-
Hi,
This is an awesome work! I am applying FastSMC in UKBB. For the input - genetic map file, what would you recommend one to use/generate? The described format looks like different from standard …