-
Hello again!
I have another issue. It's repeatable - I have 3 different datasets failing with the same error.
Here is the error message from the same dataset as in #28
MBG: src/UnitigResolver.…
-
https://twitter.com/sdeorowicz/status/1512331429031591936
-
per our last R01 submission,
>We will implement amino acid and Dayhoff-6 queries with spacegraphcats by building secondary indices on top of the cDBG unitigs, which will allow us to anchor protein …
-
Hi,
I am wondering if I can get the kmer counts along with the unitigs fasta files.
Thanks,
Moustafa
-
Hi,
I get an error
```
#Monotigs and index constuction...
error setting rlimit to 1035
```
no matter if I run Reindeer with reads or pre-computed unitigs.
The calls are
`./Reindeer --index -…
-
I am running
unitig-caller --call --reads input_reads.txt --out output_folder --threads 76 --pyseer
and
./DBGWAS -strains input_strains.txt -keepNA -output output_folder -nb-cores 76
the…
-
Hi,
We have run annotate_hits_pyseer to annotate k-mers.,but we are not sure if it has mapping quality when annotating k-mers? Do you have any suggestions?
Thank you in advance!
-
Hi,
I tried to assemble an 800mb diploid plant genome. However, it crashed
/wengan/wengan-v0.2-bin-Linux/bin/minia -in /data/Assemblies/wengan/asm.minia_reads.41.txt -kmer-size 41 -abundance-mi…
-
**Description**
Running reindeer in query mode using multiple threads throws a `Segmentation fault (core dumped)` error. I tested this using the "test" miniature dataset that comes with reindeer it…
-
Hi, Jamshed @jamshed
Thanks for cuttlefish giving me a new way to build cDBG in a very fast speed. I have one question after reading your paper. I noticed that you find the maximal unitigs by trav…