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Hi,
The final vcf is giving me these errors when I look at it with bcftools:
[W::bcf_hrec_check] Invalid tag name: "'SampleID'"
[W::bcf_hrec_check] Invalid tag name: "Compound_htz(sample)"
[W::b…
gevro updated
2 months ago
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Hello!
I love your tool and works perfectly with TRGT. I am wondering if this also works for Straglr VCF as well?
Thanks!
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Hi,
I encountered an error: `File appears to be corrupted.` when I tried to convert a BGEN file (generated by IMPUTE5) to either a BFILE or VCF.
However, I was able to use QCTOOLv2 to convert it t…
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Hi,
I am new to using bcftools +liftover, I want to liftOver from hg38 to hg19.
However, I get the error:
"Error: the reference allele GT does not match the reference NN at..."
I converted my …
ktg25 updated
2 weeks ago
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In your [paper](https://www.nature.com/articles/s41467-023-38870-2#data-availability) you say that you removed tandem duplications from the benchmark sets. Could you provide the VCFs with tandem dupli…
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Once vcztools has been [released](https://github.com/sgkit-dev/vcztools/issues/43) we should deprecate sgkit's `write_vcf` and `zarr_to_vcf` [functions for writing VCF](https://sgkit-dev.github.io/sgk…
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The message "Unable to detect build please select manually and save VCF" doesn't make sense when viewed on the processing page, you have to click the link to VCF
Should give more info here
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Add vcf file command
Add welcome command
Add audio to text command***
Add onlyadmin command
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First, thank you *very* much for this software! It might just be the final nail in my Google account's coffin.
[The vCard 3.0 `BDAY` type](https://datatracker.ietf.org/doc/html/rfc2426#section-3.1.…
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## Describe the issue
vep give different result when using multi-thread(--fork).
problem:
Some gene(like ENSG00000169047 or ENSG00000168769) will loss its refseq HGNC ID(near field EntrezGene) wh…