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The gmt folder of downloads only contains gmt files for 17 of the 25 species in the Analysis Collection. Missing species:
Solanum lycopersicum
Hordeum vulgare
Zea mays
Gibberella Zeae
Bacillus …
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I'm getting on Jenkins a NPE when reading BioPAX from one of the GPML files:
Exception in thread "main" org.pathvisio.core.model.ConverterException: class java.lang.NullPointerException: null
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egonw updated
7 years ago
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To be considered as a special case, I noticed that any edge with an anchor is actually translated into 2 edges into Cytoscape! This is a nifty trick, but certainly breaks any hope of reusing PathVisi…
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### Background
GPML (Graphical Pathway Markup Language) is the XML format used by WikiPathways and PathVisio to store graphical and semantic pathway data. [WikiPathways](http://www.wikipathways.org…
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based on GPML from the past, maybe the same years as we calculate gene counts for?
Tina, so, a second reason I like to have historic GPML files :)
egonw updated
7 years ago
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Hi !
I'm trying to use pvjs with jQuery, tried the code snippet described on the front page of the wiki but I'm getting stuck with an error, the console output is the following :
TypeError: $(...).pv…
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I understand these releases are still testing, but I went ahead and tried both on test2 and observed the following:
1. The pathway loads with the annotation panel visible and default "Header" and "des…
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See:
![wiki](https://f.cloud.github.com/assets/2039375/1254483/d89a6122-2b76-11e3-8b77-94a136b8292f.png)
We should avoid this. If it's a problem in Wikipathways (i.e., this is listed as a pathway) …