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The obsoletion of XPO:0100068 (abnormal anatomical region) has left several terms without a path to XPO:00000000 (Xenopus Phenotype). Perhaps rather than being obsoleted this needs to be part of some…
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The list of ontologies from OBO that aren't in BioPortal has grown, the following OBO Library ontologies are missing from BioPortal (italicized ontologies were missing March 2018, so may be 'known iss…
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In the abnormalDevelopmentOfAnatomicalEntity.yaml pattern, the ID given for the 'developmental process' class should be GO:0032502 instead of the root-level biological_process ID (GO:0008150).
http…
seger updated
4 years ago
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Consider using patterns that combine more general GO processes with XAO terms (e.g. abnormal GO:development + XAO:head) rather than GO-based patterns that include an anatomical aspect (abnormal GO:'he…
seger updated
4 years ago
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Currently, some probably stale version on old XP draft:
https://github.com/obophenotype/xenopus-phenotype-ontology/blob/master/src/patterns/Makefile
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Adjust and test this:
https://github.com/obophenotype/xenopus-phenotype-ontology/blob/master/src/scripts/assign_unique_ids.py
So that identifiers to not have to be assigned during manual curation.
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The current release of XPO still contains equivalent classes. We need to make sure that there are no equivalent classes prior to curation:
```
XPO_0126883 = XPO_0115427
XPO_0115822 = XPO_0115429…
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@malcolmfisher103
@seger
we should set up a meeting soon to discuss next steps!
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The Xenopus Phenotype Ontology is now in development and I wish to request the XPO prefix and PURL in OBO.
Requested prefix: XPO
Ontology title: Xenopus Phenotype Ontology
Download link: http…
seger updated
5 years ago