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Hi!
Could I prepare the pickle file using a subset of PDB files? And so that I could search for a functional site against the subset of the PDB database. I tried the `embed_pdb_dataset.py` script, bu…
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```
$ echo 'version development
workflow main {
call main { input: s1 = "x", s2 = "y" }
output { Array[File] f = main.f }
}
task main {
input {
String s1
String s2
}
…
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Hi,
We recently setup TOPCONS2 on our HPC cluster using a singularity container but unfortunately, we cannot work with sqlite3 databases on our system. If I understood correctly, the pfam_scan_to_pro…
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### Description of the issue:
Protoporphyrin ferrochelatase enzyme (FECH) was classified as EC 4.99.1.1 but now it's classified as 4.98.1.1. This change is already updated in several databases includ…
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# I performed the following experiment
- Downloaded datasets [1], [2] and [3]
- Extracted PA views for control and pneumonia patients (for [2] all "pneumonia" images were used regardless of the ty…
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Hello LIPME Bioinformatics Team,
My name is Kevin and I am currently using your package in a project, it is really nice and cool. I would like to know if there is a way to reroot the tree? I have l…
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Dear all,
I have tried to do sme analisys using sleuth only a small subset data. when I try to use live sleuth I have this error:
```
> sleuth_live(so)
Listening on http://127.0.0.1:42427
Error…
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It seems there is a way to delete samples from a uri/database via the CLI, ie `tiledbvcf delete`. I'm getting an error when I try this and need help understanding why this is happening.
```shell
…
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Hi,
Can request to know how to solve this error? Many thanks in advance.
```
chewBBACA.py AlleleCall -i .genomes/ -g listgenes_core.txt -o results --cpu 6 --ptf Streptococcus_agalactiae.trn
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I use
`GenomicDataCommons::status() $commit [1] "e588f035feefee17f562b3a1bc2816c49a2b2b19" $data_release [1] "Data Release 16.0 - March 26, 2019" $status [1] "OK" $tag [1] "1.20.0" $version [1] 1`
…