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Hi Sheng Yang, thank you for your excellent tool.
In the latest version (`commit d1b71fa`) of master branch, the `DBSLMM.R` script in `software` folder will raise several errors like "Failed to ope…
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I might need https://github.com/bulik/ldsc in a separate Docker container.
https://hub.docker.com/r/manninglab/ldsc/dockerfile - could this be a starting point?
ofrei updated
3 years ago
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I suggest to add https://www.gnu.org/software/parallel/ to the container - it's a fairly standard tool, and it's very useful.
ofrei updated
4 years ago
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Hi,
I am using Roary 3.12 on ~20,000 GFF files with 12 threads and 900GB of RAM. "roary" has been running for 9 days. I was wondering if there is any way or setting I can use to improve the running…
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Hi Jean,
Thanks for your great MR tools.
I found that 'gwas_merge' may select wrong columns when my data have columns name the same as the parameter's names.
If I have both 'SE' and 'se' col…
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Hello!
I've tried this:
> You can also provide this function in inst/httptest/request.R, and any time your package is loaded (as when you run tests or build vignettes), this function will be calle…
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Hi Chris,
I'm using the 'coloc.abf' function on the summary p-value data, and I get an error like this：
Error in data.frame(V, z, r, lABF) :
arguments imply differing number of rows: 4, 3
I…
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Hi Hamazaki,
I want to analyze for genome wide epistasis with a dataset of 664 individuals and 11000 SNPs. I ran the analysis with demo data and it works great but when I use my data I get this err…
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Started with [SBCGC_WES_Example.ipynb](https://github.com/ga4gh/fasp-scripts/blob/ff9575e4306fb276207fbc658279b84fc08b49cf/fasp/scripts/wes/SBCGC_WES_Example.ipynb).
Posting here as I know others (…
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Hi Sam,
I am new to your tool and I am having a hard time getting it to run for the first time. I have a single sample I would like to run PRSice on. The error 'No phenotype presented' made me look i…