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Extending on #35 it would be nice to have an example using Dask and Torch together to parallelize prediction. This should be a simple embarrassingly parallel use case, but I suspect that it would be …
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Hi there
I am having some issue with an out of range error with the phobius output or during merging phobius/signalp outputs. Its proceeding, but due to the error, neither the phobius, not the sign…
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Rename:
Malacostraca to ‘Crabs, lobsters and isopods’ (from ‘Crabs and lobsters')
Hymenoptera to ‘Sawflies, wasps, bees and ants’ (from ‘Ants, bees and wasps’)
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Two issues have come to light relating to auto-verification:
**UKBMS records**
Currently these are being auto-accepted if they pass all checks; however, the UKBMS data entry forms allow many diffe…
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Looking at the list of records "Awaiting review" for aculeate Hymenoptera, if I use the new Elastisearch grid I can see 10 imported iNaturalist records belonging to a Recorder named "wildjohnlee" - eg…
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(python2) [root@localgc 1Genome_quast_introduction]# funannotate test -t annotate
#########################################################
Running `funannotate annotate` unit testing
Downloading: …
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@rachaelgallagher @jmadin et al. I've added a use case for dataset registry review process
in our architecture document here: https://docs.google.com/document/d/1O-B4fJ-60URy_NODngD3j5NtrFfkzj94zFY…
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- [x] Culicidae
- [x] Aedes aegypti
- [x] Aedes albopictus
- [x] Aedes
- [ ] Culex
- [ ] Culex quinquefasciatus
- [ ] flavivirus
- [ ] Dengue
- [ ] Chagas
- [x] Chikungunya
- [ ] vaccine
-…
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Hi Brant. I am trying to use phyluce_assembly_match_contigs_to_probes but it gives the following error:
phyluce_assembly_match_contigs_to_probes --contigs Trinity-fasta-files/ --probes hymenopter…
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Datasets differ in their focus and scope. The dataset metadata therefore offers currently a single vocabulary to classify them: https://github.com/Sp2000/colplus-backend/blob/master/colplus-api/src/ma…