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### Description of bug
== Error == system call for: "['/home/host/SPAdes-3.15.4-Linux/bin/spades-hammer', '/home/host/SPAdes-3.15.4-Linux/bin/spades_test/corrected/configs/config.info']" finished ab…
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Hello! I am trying to integrate two sc datasets and am having issues with the integration. The datasets obtained are both pre-processed. Here is my code:
```
# making chromatin assay to ATAC seu…
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Hello,
I am testing alevin-fry on some public sc-RNAseq data (GEO accession: GSE81076). The issue that I have is that when I process the gene count x cell matrix in R and perform per-cell metrics,…
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I am new to use python to anlyze scRNA-seq. I run the `cellrank` workflow and always found this error.
Here is my code for `Cellrank`:
```import sys
import scvelo as scv
import scanpy as sc
imp…
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https://mp.weixin.qq.com/s/zGUmK8iPmV2u1ktNUxzmFg
ixxmu updated
2 years ago
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Hi, your paper says
"For each single-cell dataset, we computed the cytokine activities for individual cells using the CytoSig model and got the mean value for each cell type in each patient."
I…
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### Project short name:
CrossTissueReferenceMap
### Primary Wrangler:
Ami
### Secondary Wrangler:
@ESapenaVentura
### Associated files
**Google Drive:**
https://docs.google.com/sp…
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# 生信爱好者周刊(第 44 期):
这里记录每周值得分享的生信相关内容,周日发布。
本杂志开源(GitHub: [ShixiangWang/weekly](https://github.com/ShixiangWang/weekly)),欢迎提交 issue,投稿或推荐生信相关内容。
[「生信周刊讨论区(语雀)」](https://www.yuque.com/shixiangw…
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**Work in progress**
While working on single-cell sequencing terms, I realised that the 'transcription profiling by high throughput sequencing' branch should be reviewed:
- [x] ‘DNA-seq’ and 'wh…
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Hi! I got some troubles when I used bMIND. How could I solve this?
```
suppressPackageStartupMessages(library(MIND))
library(data.table)
library(tidytable)
sce % data.frame()
rownames(sce)
Ci-TJ updated
2 years ago