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Hi,
I have successfully run wgmeth using version 1.2.3 in the past but came across an error recently in trying to run it:
The above exception was the direct cause of the following exception:
…
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Hello,
I have 6 trinity fasta files, one for each tissue. How do I use all of this information PASA to get the genome annotation?
Would I run one of the fastas to create the database and then loa…
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Hi!
i noticed that `SelectGenes` Available genome are: hg19, hg38, mm9, and mm10
can i use the genomes of other species?
If so, how exactly should I do it
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I have already run Pyrodigal on ~50k genomes and would like to run GECCO on these genomes without rerunning Pyrodigal in the backend. Is there similar usage to `antiSMASH` where precompute gene model…
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HI,
I'm getting the message 'Ideogram of contig NC_001357_AY262282.1_Humanpapillomavirus_type_18_complete_sequence cannot be drawn, because no Giemsa staining information is available.' How can I …
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Dear
I met with such errors when I run Braker3.
ERROR in file /opt/BRAKER/scripts/braker.pl at line 6172
Failed to execute: /usr/bin//etraining --species=Carberry2 --AUGUSTUS_CONFIG_PATH=/home/AA…
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This is a link to the code that Claudia used for computing the trinucleotide content of a genome.
Could be added in the wiki I don't know if in bbg tools or where.
https://github.com/bbglab/hotspo…
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Hello,
I am following [this](https://morris-lab.github.io/CellOracle.documentation/notebooks/02_motif_scan/02_atac_peaks_to_TFinfo_with_celloracle_20200801.html) tutorial to obtain a base GRN, with…
acv21 updated
1 month ago
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Hi,
Thanks for contributing to this fascinating tool.
According to your example, only one Fasta file was given as input. How can I provide multiple Fasta files for FMAlign2?
Please note that all …
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Numbat has [Using Existing CNV Calls](https://kharchenkolab.github.io/numbat/articles/numbat.html#using-existing-cnv-calls) for borrowing information from sample-matched whole genome sequencing. Such …