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Hello
I am really new to programming languages and using Dada2 is just my experience number two next to QIIME.
Maybe my questions would sound little novice, but I would appreciate any kind of help.…
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This week should demonstrate how to manage and handle sequence data. This should include sequence analysis that is not phylogenetics. An idea for a project might be that the students build a local BLA…
rvosa updated
7 years ago
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It would be nice if we could make the beta diversity input types more flexible.
For instance, some distance metrics that operate directly on proportions can perform better when working with the raw…
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Ross: phylogenetically-naive approach - distance to centroid
Hollie: phylogenetically-informed approach
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At group meeting last week, we discussed the importance of knowing if one leaf sequence was sequenced once, a few times, or many times. Vlad's deduplication collapses sequences that are same sequence…
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Dear Dr. Miller,
I am using metricTester to explore null model behavior of my data set for my research and encountering errors from using `expectations()` function. I am interested in the regional …
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It's my understanding that @lauranoges et al. are sometimes interested in sequences that are highly evolved from the naive sequences (that's why we have #102, #121 and #124 ). However, our current tre…
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look for details in section 5.3 pages 922-925 . at Faith's et al (2012) Climate
change impacts on the tree of life: changes in phylogenetic diversity
illustrated for Acropora Corals. Biology 1: …