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qiime2
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q2-diversity
BSD 3-Clause "New" or "Revised" License
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BUG: fix bioenv erroring on MD columns without any data
#361
lizgehret
closed
3 months ago
1
BUG: x-axis data missing in alpha rarefaction viz
#360
lizgehret
closed
5 months ago
4
BUG: alpha_rarefaction viz has lost sequencing depth data
#359
lizgehret
closed
5 months ago
0
BUG: fixed swapped labels for beta_correlation action
#358
cherman2
closed
6 months ago
1
Add action for filtering FeatureData[AlphaDiversity]
#357
hagenjp
closed
6 months ago
0
MAINT: python 3.9 updates
#356
Oddant1
closed
6 months ago
0
Pre 2024.5 TSNE perplexity was not properly validated
#355
Oddant1
closed
6 months ago
0
ci: testing conda
#354
lizgehret
closed
7 months ago
1
The difference between the simpson and simpson_e indices
#353
WangLitt
closed
8 months ago
2
add action for filtering FeatureData[AlphaDiversity]
#352
gregcaporaso
closed
6 months ago
2
BUG: improves error message to describe too few samples retained in '…
#351
hagenjp
closed
9 months ago
2
MAINT: add threads/jobs primitives
#350
colinvwood
closed
9 months ago
1
Broken link in `qiime diversity alpha` parameter description.
#349
colinvwood
opened
9 months ago
0
BUG: Exposes 'ignore_missing_samples' parameter in core metrics from emperor
#348
hagenjp
closed
10 months ago
11
BUG: `ignore_missing_samples` param not exposed from emperor plot in `core-metrics` and `core-metrics-phylogenetic`
#347
lizgehret
closed
10 months ago
1
BUG: more descriptive error message for too few samples retained in 'alpha-group-significance' visualization
#346
lizgehret
closed
9 months ago
1
decouple file names and metadata column names
#345
gregcaporaso
opened
1 year ago
0
CI: Updates to ci-dev workflow
#344
hagenjp
closed
1 year ago
0
DEP: updating numba to solve environment for unifrac updates
#343
lizgehret
closed
1 year ago
1
enable output of group distances from `beta-group-significance` for plotting with q2-vizard
#342
gregcaporaso
opened
1 year ago
0
CI: add additional tests in commands section
#341
lizgehret
closed
1 year ago
0
CI: testing
#340
lizgehret
closed
1 year ago
0
bug: updating metadata to static usage URL
#339
lizgehret
closed
1 year ago
0
ENH: Add partial Procrustes support
#338
gibsramen
closed
1 year ago
4
ci: force re-render for new skbio version
#337
lizgehret
closed
1 year ago
0
dep: adding r-base
#336
lizgehret
closed
2 years ago
0
Revert "pin: R 4.2.0"
#335
lizgehret
closed
2 years ago
0
pin: R 4.2.0
#334
lizgehret
closed
2 years ago
0
imp: adding R traceback for better error handling
#333
lizgehret
closed
2 years ago
0
ex: adds usage examples for Hacktoberfest
#332
lizgehret
closed
1 year ago
1
PIN: use global scipy pin
#331
ebolyen
closed
2 years ago
0
dep: rebuild for skbio 0.5.7 and pandas >=1.2.5
#330
thermokarst
closed
2 years ago
0
maint: fix tests in prep from skbio 0.5.7
#329
thermokarst
closed
2 years ago
1
upgrade to adonis2
#328
nbokulich
opened
2 years ago
12
dep: pin skbio, sklearn, and biom
#327
thermokarst
closed
2 years ago
0
Pip 22.0.4 pip install -e . fails
#326
Oddant1
closed
1 year ago
1
ENH:Add subsample w/replacement in phylo-cm
#325
ElDeveloper
closed
2 years ago
1
Citation updates/DOI adds
#324
ChrisKeefe
closed
2 years ago
1
ENH: add random_state param in dim reduction methods
#323
misialq
closed
2 years ago
1
recipe: nodejs host -> build
#322
thermokarst
closed
2 years ago
0
dep: drop unifrac pin
#321
thermokarst
closed
3 years ago
0
Bioenv raises a ValueError when a metadata file has columns with no values, even when other columns have values
#320
danielhjacobs
closed
3 months ago
2
File name too long
#319
sjanssen2
closed
1 year ago
7
ENH/API: support coloring Mantel scatters
#318
wasade
closed
2 years ago
7
Special characters in metadata groups break links to graphs
#317
colinbrislawn
closed
4 months ago
6
Closes `plt.Figure()` after saving mantel test plot to free up memory
#316
valentynbez
closed
3 years ago
1
Pandas revert
#315
lizgehret
closed
3 years ago
0
ci: update recipe
#314
thermokarst
closed
3 years ago
0
ci: library integration
#313
thermokarst
closed
3 years ago
0
maint: new pandas groupby api
#312
thermokarst
closed
3 years ago
2
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