qiime2 q2-diversity issues

qiime2 / q2-diversity

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DOC: fixes broken adonis link

#311 ChrisKeefe closed 3 years ago
0
DOCS: broken link in Adonis docs

#310 ChrisKeefe closed 3 years ago
1
MAINT: Updated q2-diversity from q2-types & syntax adjustments

#309 lizgehret closed 3 years ago
1
ENH: Multiple changes and enhancements

#308 ElDeveloper closed 3 years ago
3
new: python 3.8

#307 thermokarst closed 3 years ago
0
imp: m2 fmt validation and metadata-compatible

#306 thermokarst closed 3 years ago
2
procrustes_analysis: output M^2 and p value for display in emperor

#305 ahdilmore closed 3 years ago
3
adonis: add option to ignore NaNs

#304 nbokulich opened 3 years ago
0
imp: adonis - tighten scope of nan-checking; tests

#303 thermokarst closed 3 years ago
3
Correct negative eigenvalues for PCoA on semi-metric distances

#302 ChrisKeefe opened 3 years ago
0
bug: npm install --no-save

#301 thermokarst closed 3 years ago
0
Added t-SNE and UMAP Function

#300 TimJLU closed 3 years ago
10
DEPS: pandas 1

#299 thermokarst closed 4 years ago
0
Frame is cut when looking at a rarefaction plot

#298 ElDeveloper closed 1 year ago
3
Verify ADONIS method works with R 4.0

#297 ebolyen closed 4 years ago
1
IMP: Remember ticks in 'qiime diversity alpha-rarefaction' if metric changes

#295 angrybee opened 4 years ago
0
UX Bug: `beta` allows RelativeFrequency, Type errors on RF with unsupported metrics

#296 jkibilds opened 4 years ago
4
IMP: adds skbio alpha div metrics url

#294 ChrisKeefe closed 4 years ago
0
API `n_jobs` to `thread` breaking change in #281

#293 gwarmstrong closed 4 years ago
3
Exposing unifrac.meta

#292 wasade closed 2 years ago
27
IMP: Save plots from qiime diversity alpha-rarefaction

#291 angrybee opened 4 years ago
3
Handle weighted version of `minkowski`

#290 ChrisKeefe opened 4 years ago
0
Reinstate `mahalanobis`

#289 ChrisKeefe opened 4 years ago
0
`beta` not capable of handling `wminkowski`, `mahalanobis`

#288 ChrisKeefe closed 4 years ago
0
Reinstate `lladser_ci` with improved handling of ci Results

#287 ChrisKeefe opened 4 years ago
0
`alpha` not capable of handling `lladser_ci` metric

#286 ChrisKeefe closed 4 years ago
1
Add tests catching table data mutations in pipelines and alpha-rarefaction

#285 ChrisKeefe closed 4 years ago
1
MAINT: Remove deprecated `alpha-phylogenetic-` methods

#284 ChrisKeefe closed 4 years ago
0
MAINT: Change depth column name

#283 Oddant1 closed 4 years ago
0
ENH: adonis: validate metadata to check for NaNs

#282 collin-le closed 3 years ago
1
ENH: Route all diversity calculations through diversity-lib

#281 ChrisKeefe closed 4 years ago
5
ENH: Route all alpha and beta diversity calculations through q2-diversity-lib

#280 ChrisKeefe closed 4 years ago
1
more informative error message for name clashes

#279 sjanssen2 closed 4 years ago
4
BUG: Corrects typo in mantel skbio URL

#278 ChrisKeefe closed 4 years ago
0
Ports alpha, beta, and associated _phylogenetic calls to diversity-lib

#277 ChrisKeefe closed 4 years ago
1
Bioenv 0 variance filter

#276 Oddant1 closed 4 years ago
3
Bioenv fails if 0 variance columns are left after dropping rows with empty cells

#275 Oddant1 closed 4 years ago
1
ENH: Wires up core-metrics(-phylo) to use diversity-lib

#273 ChrisKeefe closed 4 years ago
4
Transition alpha_phylogenetic_alt to alpha_phylogenetic

#272 gwarmstrong closed 4 years ago
9
Added jensenshannon metric

#271 patrickimran closed 4 years ago
2
HACK: pin libopenblas for vegan

#270 ebolyen closed 4 years ago
0
HACK: Pin pandas to less than 1

#269 Oddant1 closed 4 years ago
0
Pandas 1 fixes

#268 andrewsanchez closed 4 years ago
1
"Hand-build" test data for weighted unifrac

#267 ChrisKeefe opened 4 years ago
0
ENH: adonis: validate metadata to check for NaNs

#265 nbokulich closed 3 years ago
5
BUG: fix escaping of filenames in beta-group-sig

#264 ebolyen closed 5 years ago
2
FIX: problem with wrong encoded filenames, closes #197

#263 angrybee closed 5 years ago
3
Bray-Curtis: `Data must be symmetric and cannot contain NaNs.`

#262 sjanssen2 opened 5 years ago
2
alpha correlation intersect ids

#261 tkosciol closed 5 years ago
0

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