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qiime2
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q2-diversity
BSD 3-Clause "New" or "Revised" License
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ENH: core-metrics can subsample with replacement
#260
ElDeveloper
closed
5 years ago
0
ENH: alpha_correlation should have intersect_ids parameter
#259
tkosciol
closed
5 years ago
3
Flipping coordinates for biplot ordination
#258
mortonjt
closed
5 years ago
3
scipy.misc.comb was deprecated, use scipy.special.comb instead
#257
nbokulich
closed
5 years ago
0
typo
#256
sjanssen2
closed
5 years ago
0
coverage < 100% in q2_diversity/_beta/_method.py
#255
gwarmstrong
closed
4 years ago
1
Remove beta phylogenetic extra error check lines
#254
gwarmstrong
closed
5 years ago
0
remove step loading phylogeny as skbio.TreeNode
#253
gwarmstrong
closed
5 years ago
0
up unifrac version to expose high performance faith's pd
#252
gwarmstrong
closed
5 years ago
3
Alpha phylogenetic alt for stacked faith
#251
gwarmstrong
closed
5 years ago
5
adonis view_type: str->int
#250
antgonza
closed
5 years ago
0
BUG: More useful error message when metadata column name too long
#249
Oddant1
closed
5 years ago
0
TST: fix tests for new Properties repr
#247
ebolyen
closed
5 years ago
0
ENH: adonis has a new name in plugin registration
#246
nbokulich
closed
5 years ago
0
support single quotes in md
#245
nbokulich
closed
5 years ago
2
adonis: support single quotes in sample metadata
#244
nbokulich
closed
5 years ago
0
adonis: enable pairwise adonis
#243
nbokulich
opened
5 years ago
0
adonis: expose `strata` parameter for nested designs
#242
nbokulich
opened
5 years ago
0
Validating the number of samples
#241
wasade
opened
5 years ago
0
DOC: Improve error message
#240
ElDeveloper
closed
5 years ago
0
BUG: adonis, normalize MD header
#239
thermokarst
closed
5 years ago
1
ENH: batch alpha calculations to reduce table / tree size
#238
wasade
closed
5 years ago
4
added vegan citation
#237
nbokulich
closed
5 years ago
1
MAINT: Travis, bump to python 3.6
#236
thermokarst
closed
5 years ago
0
BUG: fix unclosed hdf5 handle
#235
ebolyen
closed
5 years ago
0
MAINT: Updates for python 3.6
#234
thermokarst
closed
5 years ago
0
MAINT: Updating copyright headers for 2019
#233
turanoo
closed
5 years ago
0
DOC: add FSVD citation; note Legendre and Legendre for PCoA citation
#232
wasade
closed
5 years ago
1
BUG: CPU count incorrect on travis
#231
thermokarst
closed
5 years ago
0
Test suite fails on travis due to n_jobs tests
#230
thermokarst
closed
5 years ago
0
new dep: r-vegan
#229
nbokulich
closed
5 years ago
0
added vegan adonis for multi-way permanova tests
#228
nbokulich
closed
5 years ago
4
beta-group-significance: add r2 values for PERMANOVA tests
#227
nbokulich
opened
5 years ago
0
Pielou's Evenness can produce nan, causing downstream exceptions
#226
wasade
opened
5 years ago
3
beta: add Yue Clayton distance metric
#225
nbokulich
opened
6 years ago
0
`beta-group-significance` and others: add text describing stats output
#224
nbokulich
opened
6 years ago
0
Update for flake8 v3.6
#223
ChrisKeefe
closed
6 years ago
0
WIP: replace beta_phylogenetic with beta_phylogenetic_alt
#222
wasade
closed
6 years ago
0
Canberra Adkins form
#221
wasade
closed
6 years ago
3
BUG: Stop truncating long legends
#220
thermokarst
closed
6 years ago
0
ENH: Add permdisp as a group significance method
#219
ElDeveloper
closed
6 years ago
1
ENH: Add pcoa biplot method
#218
ElDeveloper
closed
6 years ago
4
Update ordination class to support new scikit-bio pcoa API
#217
HannesHolste
closed
6 years ago
6
ENH: Add error message when md is fully filtered
#216
jakereps
closed
6 years ago
0
ENH: add beta_correlation pipeline
#215
ChrisKeefe
closed
6 years ago
2
core-metrics-[phylogenetic] n-jobs is inconsistent with help text
#214
ebolyen
closed
4 years ago
6
Euclidean misbehaving
#213
mortonjt
closed
1 year ago
1
MAINT: update dependencies
#212
ChrisKeefe
closed
6 years ago
0
Procrustes analysis should return an M2 statistic
#210
ElDeveloper
closed
1 year ago
12
filter alpha diversity artifact
#209
antgonza
opened
6 years ago
0
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