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Hi,
I have been following the tutorial on github and currently stuck in Step2_Regulons calcAUC()
I've tried running it a few times using the code below:
`motifs_AUC Error in matrixWrapper(mat…
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Hi,
I am getting the error below running
> runSCENIC_2_createRegulons(scenicOptions)
05:53 Step 2. Identifying regulons
tfModulesSummary:
top5perTarget top10perTarget …
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The Regulon AUC values plot should colour all points regardless of the threshold
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have you ever seen this? i also noticed that when i try to run aucell with the num_workers argument, it complains:
```
>>> auc_mtx = aucell(ex_matrix, regulons, num_workers=4)
Traceback (most rec…
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for the lasso selected cells
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/csgroen/RTNsurvival/
Confirm the following by edi…
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Dear Valerie (@vobencha),
Please find attached our revised package now renamed to RTNduals. I hope you will be able to continue the review process of our package, for which you have provided releva…
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Dear Bioc Reviewers,
Please, see below the GitHub repository URL for our new software called "RTNmotifs". The software presented here is an original contribution that offers a bioinformatics approa…
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When you make a search with list of names and then select few genes from the results table and then click "View networks for selected regulons" at the bottom of the table, link to the cytoscape networ…