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Joey-
In your "Waste not, want not" paper you suggest that researchers interested in PCA and clustering ought to consider using variance stabilized data rather than proportions or rarified data.
DEs…
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Since the release of v9.0.2, doing a `python setup.py clean` resolves FFMpeg headers and fails if unable to locate them.
This project should never cleanup that other project, so seemingly has no need…
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Due to recent Sphinx version updates, our test build has been failing, hence we must understand to un-pin the Sphinx version. (#1719) changes the `pip_requirements.txt` to install `Sphinx
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I am having a problem merging samples using `merge_samples()` function:
the `phyl1` is a phyloseq object, if I run:
```
m_phyl1
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Hi,
From your requirements list it is not immediately obvious why `export2graphlan` should be Python 2.7 only. Could you comment on that? I'd be happy to submit a patch that makes it 2&3 compatible…
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@mortonjt noted some installation issues re: `CmdStan`. Should look into the combination of `arviz`/`CmdStanPy`/`CmdStan`. Docker would be useful for this down the road.
Current instructions are to…
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Hi,
I installed dokdo using the following command when in conda environment qiime2-2022.8
```
$ git clone https://github.com/sbslee/dokdo
$ cd dokdo
$ pip install .
```
However, I do not …
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humann3 (3.0.0.alpha.3) requires that the `--protein-database` directory only contain the `*.dmnd` named as it is looking for (eg., `uniref90_201901.dmnd`). If anything else is in the same directory, …
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Hi team,
I am trying to use summarize_otu_distributions.py parse my biom table exported from Qiime2. I ran into an issue:
> Traceback (most recent call last):
> File "summarize_otu_distributi…
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**Submitting author:** @nociale (Alessandro Noci)
**Repository:** https://github.com/insightsengineering/rbmi
**Branch with paper.md** (empty if default branch):
**Version:** v1.1.4
**Editor:** @fboe…