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humann
HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).
http://huttenhower.sph.harvard.edu/humann
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typo in utils.py
#61
SilasK
opened
6 months ago
0
SSL certificate for dataset download is outdated
#60
rattei
closed
7 months ago
1
need md5 for lasted database
#59
zhunshi
closed
10 months ago
1
Implement download resumption in `humann_databases`
#58
kmlhpk
closed
11 months ago
1
^MMD5 checksums do not correspond! If this happens again, you should remove the database files and rerun MetaPhlAn so they are re-downloaded
#57
Chandrima-04
closed
1 year ago
2
EggNOG IDs
#56
FelipeMSD
closed
1 year ago
1
V4 alpha
#55
ljmciver
closed
1 year ago
1
database error
#54
jiyanhan
closed
1 year ago
1
about retrieving the sequences(or representive sequences) of the gene families
#53
IRSADFERHAT
closed
1 year ago
1
V3p7
#52
ljmciver
closed
1 year ago
0
pick-frames
#51
JeremyTournayre
closed
1 year ago
1
bypass prescreen always = True
#50
nashanghenzan
closed
1 year ago
1
Humann with newest MetaCyc release
#49
andreupaytuvi
closed
1 year ago
1
Got "local variable 'MINimum' referenced before assignment" while running
#48
telatin
closed
1 year ago
1
utf-8 decode error while running humann_join_tables: reading hidden files on osx
#47
kclambi1
closed
1 year ago
1
The input file of humann_regroup_table
#46
zhangy2361
closed
1 year ago
1
v3.6
#45
ljmciver
closed
2 years ago
0
HUMAnN3.5 error with MetaPhlAn4
#44
Axolotl233
closed
2 years ago
1
Check t__ only on rows with taxonomy
#43
fasnicar
opened
2 years ago
0
Available storage optimization for running HUMAnN at small lab
#42
alienzj
opened
2 years ago
1
More robustly parse metaphlan profile
#41
alienzj
opened
2 years ago
0
docker image for v3.0.1
#40
hmkim
closed
2 years ago
1
No MetaPhlAn BowTie2 database found (--index option)!
#39
Ahmedbargheet
closed
2 years ago
1
how to get raw counts of each gene?
#38
zhq90
closed
2 years ago
1
HUMAnN v3.5
#37
ljmciver
closed
2 years ago
0
Change out demo database in python package
#36
ljmciver
closed
2 years ago
0
HUMAnN version 3.1
#35
ljmciver
closed
2 years ago
0
Couldnt run the new Humann
#34
akalichen
closed
2 years ago
1
Error when trying to use taxonomic profile
#33
krcurtis
closed
2 years ago
4
humann_genefamilies_genus_level error: 'dict' object has no attribute 'iteritems'
#32
pooranis
closed
2 years ago
1
Isolate sequencing data
#31
franciscozorrilla
closed
2 years ago
1
Fails when header includes s__
#30
luhugerth
closed
3 years ago
1
Eukaryotic portion of metagenomes
#29
ShrutiKetan
closed
3 years ago
1
minor typo in tier numbering of parameters in help message
#28
franciscozorrilla
closed
9 months ago
0
Confusing Demo Instructions
#27
DarioS
closed
3 years ago
1
humann_genefamilies_genus_level: Fix a dictionary parsing and add functional test
#26
bebatut
opened
3 years ago
0
Cannnot download databases
#25
Lix1993
closed
3 years ago
4
Humann and metaphlan issue: metaphlan_options
#24
HaotengYan
closed
3 years ago
1
autoclose issue
#23
sagun98
closed
3 years ago
1
Metatranscriptome without paired metagenome
#22
gaofeng-ni
opened
3 years ago
0
Lower peak memory usage with sqlite3
#21
wbazant
opened
3 years ago
2
Use string instead of set to reduce memory usage by blastx_coverage
#20
ljmciver
closed
3 years ago
0
Memory usage in humann3
#19
wbazant
opened
3 years ago
3
3.0.0 alpha rename
#18
ljmciver
closed
3 years ago
0
Dose "pathabundance" associate with "genefamilies" ?
#17
ouyangcong3
closed
3 years ago
1
Add --threads to bowtie-index command
#16
aeschriefer
opened
4 years ago
0
support stdin as humann2 input
#15
alienzj
closed
2 years ago
0
NOTE: Instead of opening issues in github, please consider creating a new topic in https://forum.biobakery.org/. Please read for more details.
#14
sagun98
opened
4 years ago
0
NOTE: Instead of opening issues in github, please consider creating a new topic in our bioBakery support forum. Please read for more details.
#13
sagun98
closed
4 years ago
0
humann3 --protein-database database naming requirements are too restrictive
#12
nick-youngblut
closed
3 years ago
6
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