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Hi, Whitews,
Great thanks to your wonderful work for flow cytometry analysis! I did Clustering Comparison: Leiden vs Louvain, BUT after the following codes run in Jupyter notebook, why it generated s…
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Hi,
Thanks again for the great work. :)
I'm testing cellrouter with our own data (Two conditions at day 3). There are ~20 cell sub-populations identified. K = 12 which was defined by findK functio…
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To generate the plot after the TSNE you are proposing this code:
![image](https://github.com/xuxiaohan/MSNE/assets/74925521/97b0c7a7-a873-4664-987b-b1f8d2275b5b)
But i am not sure what is the vari…
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Hi!
I wanted to use SpeakEasy2 to reproduce the results from a paper but it is unclear to me how I can access the final cluster membership after the clustering is done.
Any help will be much appr…
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I am running fuzzbench with this command:
```
PYTHONPATH=. python3 experiment/run_experiment.py \
--experiment-config config.yaml \
--benchmarks sqlite3_ossfuzz \
--experiment-name experiment \
…
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@chthub Thanks for fixing it so quickly. However, other errors come out.
```
python scGNN_v2.py --load_from_10X ~/Documents/filtered_mtx/sham --output_dir ./outputs --total_epoch 31 --featur…
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Hello,
I am following [this](https://morris-lab.github.io/CellOracle.documentation/notebooks/02_motif_scan/02_atac_peaks_to_TFinfo_with_celloracle_20200801.html) tutorial to obtain a base GRN, with…
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suddenly I have this problem, maybe related to an anndata upgrade. pip says all requirements are satisfied:
scanpy==1.4.3 anndata==0.6.22rc1 umap==0.3.9 numpy==1.16.4 scipy==1.2.1 pandas==0.24.2 sc…
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Hello,
I just tried the tutorial and met the below issue. Any suggestions? Thanks! K
>con integrated close(con = con)
>DimPlot(object = integrated, group.by = c("orig.ident", "ident"))
>cds sess…
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**Describe the bug**
Analysis is taking a long time with no indication of progress.
emerge -a CPP
edited paths in cpp-template.yml
>emerge -c cpp-template.yml
...
2023-02-21 17:12:41 ana…