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I've run blast2lca with identical parameters for 2 different blast files of the same query nucleotide sequences: the first is blastall -m 8 output; the second is blastn -outfmt 6 output. I only am get…
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Given a reference package such that some sequences are unclassified, spit out a complete CSV seq info file with
taxonomic annotations for the unclasified ones. These classifications should be conserv…
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Hi,
I'm trying to import data from QIIME using import_qiime or import_biom. Here are the versions I'm using, my code and the errors:
QIIME version: MacQIIME 1.7.0-20130523
R version: R version 3.0.2…
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**Ethan**:
- [x] The following two sentences seem rather tangential to the paper and could be removed:
"Science workflows can now easily incorporate text, code, and images in a single executable do…
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Hi,
I have been trying to make some basic figures with phyloseq. I have first subsetted my data to the top 10 most common OTUs
TopNOTUs
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- Original ID: 1111
- Added by **Irina Brake**
- Scratchpads URL: null
### Description:
In the taxonomic editor add the following help text to ITIS fields:
Associated accepted_name: The scien…
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- Original ID: 882
- Added by **Irina Brake**
- Scratchpads URL: null
### Description:
Under the Misc. tab in the taxonomic editor there is a "Description" field. This is misleading because the fi…
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- Original ID: 2272
- Added by **Niamh Kilgallen**
- Scratchpads URL: potamogetonaceae.e-monocot.org
### Description:
When editing taxon pages, images or anything else with a 'Taxonomic name' fiel…
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- Original ID: 2723
- Added by **Dimitrios Koureas**
- Scratchpads URL:
### Description:
Currently when searching for taxonomic terms, with Taxonomy button selected, through the search field only…
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- Original ID: 2191
- Added by **Alice Heaton**
- Scratchpads URL:
### Description: