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Hi
I have a general SBML question about unit tag and the value of multiplier for second.
Most models use **mmol_per_gDW_per_hr**, they define **mole**, **gram**, and **second**.
They all use *exp…
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Hello,
is "Support for coupling C*v=d", as well as for the assumptions within the function optimizeCbModel?
**I hereby confirm that I have:**
- [x] Tried to solve the issue on my own
- [x] R…
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We have tried to run the tutorial of rBioNet, but we found problems with the function rBioNetSettings.
The function requires a pre-existing rBioNetSettingsDB.mat file, which we have not found, neit…
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Typing the following line outputs an error: writeCbModel(model, 'xls').
The first part of the problem may be the following: in the writeCbModel() function, when defining the .xls extension, both .x…
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*Please include a short description of problem here*
What does the error below mean? I have tried all I can, check online... No explanation.
Thanks
>> updateCobraToolbox > Checking for availab…
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Hi @tpfau
When I use the functions extractSubNetwork and extractCompModel the fields genes and rxnGeneMat are not reduced.
If some reactions are extracted, some columns (genes) of rxnGeneMat might…
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Hello,
I used xls file format into COBRA Toolbox using the command 'xls2model' while doing simulation for genome scale metabolic models. However, now it is showing the following error message:
Erro…
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Hello
I'm trying to use a Cobra toolbox (in matlab code) in Jupyter Python notebook.
But I have an error using pymatbrigde.
I can connect matlab using magic command
```
%load_ext pymatbridge…
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We have problems running the tutorial sparse_FBA_freeATPtest.
The first step of the tutorial is to load Recon3 or other Recon:
if ~exist('modelOrig','var')
filename='Recon1.0';
%filename…
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When the exchange reactions are added the corresponding subsystems are not added
````matlab
load('ecoli_core_model.mat', 'model')
[model,~] = addExchangeRxn(model,{'13dpg[c]'})
````
`model.subSys…