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Hi all:
I just annotate three different projects from PRIDE (1000 raw files) more than 59 cell lines. Here the example https://github.com/bigbio/multiomics-configs/blob/master/datasets/NCI60/sdrf.…
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Please comment on the inclusion of the following terms in omics inclusion comparison:
**\*omic(s) matches**
| term | count |
|:--------------------|-------:|
| genomics …
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/ConesaLab/MultiBaC
Confirm the following by editi…
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Would be great if we can annotate this list:
```
PXD004732 -- ProteomeTools -- 104608
PXD000561 -- A draft map of the human proteome -- 97948
PXD002815 -- A human interactome in three quantitat…
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**Hello Ben!
I am running the dada2 of qiime2 on single reads dataset. I work in Linux and get the following error:**
R version 3.5.1 (2018-07-02)
Loading required package: Rcpp
DADA2: 1.10.0…
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Is there an existing MI for transcriptomics data that we can assess resolute against? Goal is to provide a wish list metadata for upcoming datasets
@agiani99 says it may be available in Oncotrack? Ma…
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If we're to also illustrate copy number analysis, we'll need to save CNV data in the package, right?
since reading in CNV data took a long time, consider saving it as an RDS data in /data?
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@hbarsnes @mvaudel @StSchulze
We have continued working with the metadata experimental design.
See example, https://github.com/PRIDE-Archive/pride-metadata-standard/tree/master/experimental-des…
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Use data from Chen's original paper or placenta data. Get clarifying information from Steven.
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This is the continuation of Issue #28. Now that we have the examples written, we will need to enhance, modify, and edit these examples. This is the "catch-all" issue for general vignette example edits…