gabrielodom pathwayPCA issues

gabrielodom / pathwayPCA

integrative pathway analysis with modern PCA methodology and gene selection

https://gabrielodom.github.io/pathwayPCA/

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issues

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Newest Most commented Recently updated Oldest Least commented Least recently updated

system.file() function

#95 Prometheus405 closed 1 year ago
1
i could not instal the library(rWikiPathways) and downloadPathwayArchive

#94 madeinapomu opened 2 years ago
1
Build Failing for Bioconductor

#93 gabrielodom closed 2 years ago
11
Interpretation of PC1 values among groups

#92 masaver opened 3 years ago
1
Add a warning if all levels of a categorical response are the same

#91 gabrielodom opened 3 years ago
0
CreateOmics not reading all features of assay data

#90 cfrasier closed 2 years ago
5
CreateOmics() fails for region collections

#89 gabrielodom opened 4 years ago
2
Error in read_gmt in R 4.0.0

#88 lubianat closed 4 years ago
1
Add error to TransposeAssay() if a matrix object is supplied

#87 gabrielodom opened 4 years ago
0
Export aespca()

#86 gabrielodom closed 4 years ago
0
R dependency

#85 lxw391 closed 4 years ago
1
function createOmics

#84 lizhongliu1996 closed 4 years ago
1
package failing in Bioc Devel build

#83 gabrielodom closed 2 years ago
4
Add names to sets_ls list within pathwayCollection

#82 gabrielodom closed 4 years ago
1
Include WikiPathways gene symbols collection

#81 gabrielodom closed 5 years ago
1
Filter pathways by gene symbol

#80 gabrielodom closed 5 years ago
2
read_gmt() can't open connections

#79 gabrielodom closed 5 years ago
0
CreateOmics with class OmicsSurv

#78 torongs82 opened 5 years ago
1
Labels for getPathPCL() output

#77 gabrielodom opened 5 years ago
0
Check NAR reviewer comments for vignettes

#76 gabrielodom closed 4 years ago
2
CreatePathwayCollection

#75 lxw391 closed 4 years ago
1
comparison with other methods

#74 lxw391 closed 2 years ago
1
integrative p-value for each pathway

#73 lxw391 opened 5 years ago
1
Devel

#72 lizhongliu1996 closed 5 years ago
0
Add initial testing suite for top-level functions

#71 gabrielodom closed 5 years ago
0
Add options to read_gmt, write_gmt, and CreatePathwayCollection

#70 gabrielodom closed 5 years ago
7
AESPCA: all loadings are 0

#69 gabrielodom closed 5 years ago
3
Bioconductor Review Comments

#68 gabrielodom closed 5 years ago
3
Bioconductor Conference

#67 gabrielodom closed 5 years ago
7
Suppl. Vignette 5 error

#66 gabrielodom closed 2 years ago
3
aespca warning

#65 gabrielodom closed 2 years ago
4
BiocCheck To Do List

#64 gabrielodom closed 5 years ago
23
Merging version 1 changes (May 2018 - Dec 2018) onto Master

#63 gabrielodom closed 5 years ago
1
Default number of computing cores

#62 gabrielodom closed 5 years ago
1
AESPCA_pVals errors for OmicsPathway objects

#61 gabrielodom closed 5 years ago
0
vignette example - multiOmics example - dataset

#60 lxw391 closed 5 years ago
4
AESPCA_pvals and superPCA_pvals: update message to reflect parametric version

#59 lxw391 closed 5 years ago
1
Website Comments / Edits

#58 lxw391 closed 2 years ago
11
AESPCA Non-parametric p-Values Calculation Method

#57 gabrielodom closed 5 years ago
3
CreateOmics function messages

#56 lxw391 closed 5 years ago
1
Vignettes: Add supplemental vignette chapter on plotting

#55 gabrielodom closed 5 years ago
3
AESPCA function output

#54 lxw391 closed 5 years ago
3
Reference Manual Edits

#53 lxw391 closed 5 years ago
10
vignette - example for pathway analysis

#52 lxw391 closed 5 years ago
1
Extract PCs or Loadings from Output List by Pathway Name

#51 gabrielodom closed 5 years ago
0
AESPCA function - Add Non-Parametric p-Value Option

#50 gabrielodom closed 5 years ago
6
Vignette Examples edits

#49 gabrielodom closed 5 years ago
24
vignette example - multi-omics analysis - circos plot

#48 lxw391 closed 5 years ago
10
error for AESPCA and SuperPCA examples

#47 lxw391 closed 5 years ago
3
Checking functions are called in CreateOmics*() instead of CreateOmics()

#46 gabrielodom closed 5 years ago
0